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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00044
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00044
Identity
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-115
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4irzA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.58 | 45.0 | 3.05e-01 | 81.6% | 90.1% |
| 3bt3A02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 27.0 | 3.77e-01 | 71.1% | 91.2% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 37.0 | 3.68e-01 | 71.1% | 62.8% |
| 2w5nA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 42.0 | 3.01e-01 | 79.8% | 78.6% |
| 2h36X00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 39.0 | 4.04e-01 | 71.9% | 81.5% |
| 3fh1A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 39.0 | 3.84e-01 | 73.7% | 67.2% |
| 4nehA01 | 2.130.10.130 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal | 0.55 | 42.0 | 2.94e-01 | 80.7% | 84.9% |
| 1ecsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 30.0 | 3.00e-01 | 73.7% | 50.0% |
| 3u97A00 | 3.10.450.530 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system | 0.55 | 35.0 | 4.04e-01 | 72.8% | 93.5% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 38.0 | 4.18e-01 | 71.9% | 91.6% |
| 7fisA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 41.0 | 3.09e-01 | 78.9% | 72.5% |
| 4esqA00 | 3.40.1000.70 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain | 0.55 | 42.0 | 3.60e-01 | 83.3% | 90.2% |
| 3p2nB02 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 38.0 | 2.79e-01 | 72.8% | 63.6% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 41.0 | 3.52e-01 | 80.7% | 69.5% |
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.46e-01 | 73.7% | 81.4% |
| 3ecfA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 37.0 | 3.58e-01 | 73.7% | 63.3% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.53 | 38.0 | 3.39e-01 | 73.7% | 79.9% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.55e-01 | 77.2% | 80.5% |
| 5jowA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 38.0 | 3.18e-01 | 75.4% | 65.5% |
| 5flwA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 38.0 | 2.84e-01 | 78.1% | 70.5% |
| 2bngC00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 3.42e-01 | 73.7% | 62.1% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 38.0 | 2.78e-01 | 78.1% | 87.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4552582 | 243.3.1.52 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › UPF0182 | 0.58 | 40.0 | 4.05e-01 | 71.9% | 95.7% |
| 3962153 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 40.0 | 4.04e-01 | 78.9% | 70.4% |
| 3644563 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.57 | 39.0 | 2.54e-01 | 70.2% | 49.7% |
| 3959240 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 42.0 | 4.12e-01 | 82.5% | 70.4% |
| 3956132 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 39.0 | 3.84e-01 | 75.4% | 65.8% |
| 3931614 | 331.9.1.2 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C | 0.57 | 38.0 | 3.84e-01 | 70.2% | 67.0% |
| 3283270 | 881.1.1.15 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 | 0.57 | 44.0 | 4.19e-01 | 84.2% | 95.0% |
| 3936097 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.56 | 44.0 | 4.00e-01 | 84.2% | 87.3% |
| 3278719 | 881.1.1.15 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 | 0.56 | 44.0 | 4.17e-01 | 84.2% | 94.3% |
| 3711273 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 37.0 | 3.79e-01 | 70.2% | 68.4% |
| 3289978 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 41.0 | 3.83e-01 | 78.1% | 66.2% |
| 3961987 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.55 | 43.0 | 3.65e-01 | 83.3% | 90.8% |
| 3278665 | 881.1.1.15 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 | 0.55 | 43.0 | 4.02e-01 | 84.2% | 93.0% |
| 4013480 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.55 | 37.0 | 3.65e-01 | 71.9% | 64.0% |
| 3191210 | 243.1.1.83 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26061 | 0.54 | 37.0 | 3.46e-01 | 71.9% | 55.2% |
| 3279130 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.54 | 40.0 | 3.95e-01 | 78.9% | 73.3% |
| 365513 | 331.15.1.1 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 › DUF1374 | 0.54 | 38.0 | 4.09e-01 | 72.8% | 88.9% |
| 2583626 | 331.3.1.14 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3568 | 0.54 | 38.0 | 3.83e-01 | 73.7% | 76.7% |
| 3579354 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 40.0 | 4.08e-01 | 79.8% | 80.9% |
| 3286118 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.53 | 40.0 | 3.94e-01 | 78.9% | 74.2% |
| 3227515 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 38.0 | 3.69e-01 | 74.6% | 86.0% |
| 3266531 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.53 | 41.0 | 3.63e-01 | 81.6% | 67.3% |
| 5074806 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.53 | 38.0 | 3.01e-01 | 74.6% | 67.8% |
| 3267039 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.53 | 37.0 | 3.17e-01 | 72.8% | 75.1% |
| 3194888 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.53 | 42.0 | 3.77e-01 | 85.1% | 78.8% |
| 4611698 | 9.1.1.28 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Pallilysin | 0.53 | 37.0 | 3.54e-01 | 71.9% | 66.2% |
| 4990370 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.52 | 38.0 | 3.35e-01 | 76.3% | 67.6% |
| 2029625 | 896.2.1.1 ↗ | a+b two layers › SRP9/14-like › Cell wall binding protein cwp8 domain 3 › Cell wall binding protein cwp8 domain 3 › Cwp8_D3 | 0.51 | 40.0 | 4.30e-01 | 86.8% | 94.9% |
| 3177342 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.51 | 40.0 | 3.81e-01 | 84.2% | 91.9% |
| 3284293 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.50 | 37.0 | 3.59e-01 | 78.1% | 73.1% |