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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00089
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00089
Identity
- Kingdom:
- phage
Quality
50.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 433-509_521-602
Domain cluster:
rep: OQ791408.1__WID10864.1__phiG2_21__00021__D3-153
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01832.26 best | Glucosaminidase | 74.8 | 1.40e-20 | 78.6% | 89.4% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zycA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.88 | 58.0 | 7.06e-01 | 99.4% | 100.0% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.85 | 61.0 | 7.05e-01 | 92.5% | 98.3% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 54.0 | 5.11e-01 | 95.0% | 77.3% |
| 4fczA00 | 3.10.450.710 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC | 0.53 | 41.0 | 3.95e-01 | 80.5% | 82.5% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 32.0 | 3.38e-01 | 78.0% | 65.1% |
| 2gbbB00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.52 | 38.0 | 3.84e-01 | 88.1% | 75.5% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 34.0 | 3.99e-01 | 86.8% | 97.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1406787 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.85 | 61.0 | 7.05e-01 | 92.5% | 98.3% |
| 3589177 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.81 | 70.0 | 6.97e-01 | 94.3% | 87.7% |
| 4680920 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.81 | 72.0 | 7.38e-01 | 93.1% | 96.7% |
| 4520768 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.78 | 71.0 | 6.96e-01 | 95.0% | 88.8% |
| 4007762 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.76 | 70.0 | 6.84e-01 | 97.5% | 90.2% |
| 3285050 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 68.0 | 6.67e-01 | 95.0% | 96.4% |
| 4013211 | 3352.1.1.28 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PMT+PMT_4TMC | 0.51 | 42.0 | 3.11e-01 | 88.1% | 91.1% |
D2
high
residues 662-775
D3
medium
residues 54-121
D4
medium
residues 338-430