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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00108
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00108
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-146
Domain cluster:
rep: IMGVR_UViG_3300021509_000003-3300021509-Ga0190304_100009151__D537-667
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00188.33 best | CAP | 55.7 | 1.30e-14 | 91.9% | 99.2% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.91 | 81.0 | 5.91e-01 | 100.0% | 39.4% |
| 4d53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.90 | 86.0 | 8.39e-01 | 100.0% | 94.0% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.89 | 85.0 | 6.23e-01 | 100.0% | 43.7% |
| 5vhgA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.84 | 80.0 | 7.43e-01 | 100.0% | 87.3% |
| 4p27A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.83 | 79.0 | 7.24e-01 | 100.0% | 89.7% |
| 4g2uA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.77 | 73.0 | 5.97e-01 | 100.0% | 74.8% |
| 5jysA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.77 | 72.0 | 6.89e-01 | 99.2% | 87.9% |
| 3s6sB00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.76 | 71.0 | 6.24e-01 | 100.0% | 69.7% |
| 1cfeA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.75 | 70.0 | 6.82e-01 | 98.4% | 92.6% |
| 2vqeC02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.63 | 46.0 | 5.08e-01 | 78.2% | 93.0% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.62 | 45.0 | 4.47e-01 | 78.2% | 70.7% |
| 4bbyA05 | 3.30.300.330 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 36.0 | 3.82e-01 | 91.9% | 69.4% |
| 4evuB00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.57 | 33.0 | 4.09e-01 | 88.7% | 100.0% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.57 | 40.0 | 3.64e-01 | 71.8% | 78.7% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.56 | 27.0 | 3.12e-01 | 80.6% | 60.0% |
| 4ew7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 38.0 | 3.98e-01 | 100.0% | 76.1% |
| 1zhhB01 | 3.30.450.220 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain | 0.55 | 42.0 | 3.96e-01 | 81.5% | 79.0% |
| 1vr4E00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.53 | 38.0 | 4.32e-01 | 83.9% | 97.8% |
| 3e3pA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 33.0 | 3.88e-01 | 75.8% | 97.4% |
| 2bghA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 40.0 | 3.45e-01 | 100.0% | 50.2% |
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.51 | 38.0 | 3.84e-01 | 77.4% | 96.0% |
| 3euoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 3.69e-01 | 82.3% | 99.4% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.51 | 36.0 | 3.25e-01 | 100.0% | 52.0% |
| 4jaqA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 40.0 | 3.87e-01 | 100.0% | 74.5% |
ECOD (77)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5084002 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.97 | 94.0 | 9.11e-01 | 100.0% | 94.1% |
| 4942971 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.94 | 90.0 | 7.93e-01 | 99.2% | 98.8% |
| 5015571 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.93 | 88.0 | 8.07e-01 | 97.6% | 96.7% |
| 4031162 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.92 | 88.0 | 8.64e-01 | 98.4% | 96.2% |
| 3278331 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.92 | 88.0 | 8.28e-01 | 100.0% | 99.3% |
| 3283186 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.91 | 88.0 | 8.27e-01 | 100.0% | 90.3% |
| 224049 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.91 | 81.0 | 8.24e-01 | 100.0% | 94.3% |
| 5022449 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.90 | 81.0 | 6.56e-01 | 100.0% | 54.8% |
| 1697211 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.90 | 86.0 | 8.39e-01 | 100.0% | 94.0% |
| 3952808 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.89 | 85.0 | 8.27e-01 | 100.0% | 96.3% |
| 1031145 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.89 | 85.0 | 8.24e-01 | 100.0% | 91.7% |
| 3968107 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.88 | 84.0 | 8.02e-01 | 99.2% | 98.6% |
| 3964094 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.88 | 83.0 | 7.68e-01 | 97.6% | 92.7% |
| 4929542 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.88 | 84.0 | 7.68e-01 | 100.0% | 97.4% |
| 3963099 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.87 | 82.0 | 7.97e-01 | 99.2% | 95.6% |
| 3448585 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.86 | 82.0 | 7.68e-01 | 99.2% | 99.3% |
| 3470151 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.86 | 82.0 | 7.40e-01 | 100.0% | 90.6% |
| 3992804 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.85 | 72.0 | 7.65e-01 | 97.6% | 99.1% |
| 5029848 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.85 | 82.0 | 7.18e-01 | 100.0% | 80.6% |
| 3220818 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.85 | 81.0 | 6.95e-01 | 100.0% | 76.0% |
| 3934681 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.84 | 81.0 | 6.77e-01 | 100.0% | 65.6% |
| 3235186 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.84 | 71.0 | 7.62e-01 | 96.8% | 100.0% |
| 3616880 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.84 | 81.0 | 6.80e-01 | 100.0% | 78.9% |
| 3933163 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.84 | 80.0 | 6.54e-01 | 100.0% | 61.5% |
| 3928387 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.84 | 79.0 | 7.25e-01 | 99.2% | 89.7% |
| 3596055 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.83 | 78.0 | 7.60e-01 | 99.2% | 96.3% |
| 3939771 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.83 | 80.0 | 7.55e-01 | 100.0% | 88.2% |
| 5008575 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.83 | 79.0 | 7.58e-01 | 100.0% | 95.7% |
| 3532103 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.83 | 79.0 | 7.53e-01 | 100.0% | 93.6% |
| 3712894 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.83 | 78.0 | 7.51e-01 | 100.0% | 93.6% |
| 3938651 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.83 | 80.0 | 7.14e-01 | 100.0% | 77.3% |
| 3478962 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.83 | 79.0 | 7.07e-01 | 100.0% | 80.0% |
| 3427297 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.83 | 78.0 | 7.39e-01 | 100.0% | 96.6% |
| 4001525 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.83 | 78.0 | 5.48e-01 | 100.0% | 39.7% |
| 3934165 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.82 | 79.0 | 6.74e-01 | 100.0% | 67.6% |
| 3926346 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.82 | 78.0 | 7.25e-01 | 100.0% | 86.7% |
| 3923217 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.82 | 78.0 | 7.35e-01 | 100.0% | 85.4% |
| 3938738 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.82 | 78.0 | 6.88e-01 | 100.0% | 73.5% |
| 3416151 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 78.0 | 6.95e-01 | 100.0% | 93.3% |
| 3925453 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 75.0 | 7.18e-01 | 100.0% | 85.0% |
| 3997567 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 77.0 | 6.58e-01 | 100.0% | 75.7% |
| 3882395 | 864.1.1.8 ↗ | a+b two layers › DLC › DLC › DLC › CEP76_C | 0.81 | 75.0 | 7.24e-01 | 100.0% | 89.6% |
| 3495541 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.81 | 77.0 | 7.17e-01 | 100.0% | 88.0% |
| 3586795 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 77.0 | 6.63e-01 | 100.0% | 78.0% |
| 3837302 | 273.1.1.4 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › PF25884 | 0.81 | 76.0 | 7.06e-01 | 98.4% | 88.7% |
| 3491412 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.81 | 76.0 | 6.96e-01 | 100.0% | 96.1% |
| 3812911 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.81 | 76.0 | 7.29e-01 | 100.0% | 97.1% |
| 3929967 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.80 | 73.0 | 7.20e-01 | 100.0% | 91.5% |
| 3662594 | 273.1.1.4 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › PF25884 | 0.80 | 76.0 | 7.09e-01 | 100.0% | 88.7% |
| 3931530 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 73.0 | 7.49e-01 | 98.4% | 100.0% |
| 3931930 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.80 | 76.0 | 5.93e-01 | 99.2% | 52.9% |
| 3408025 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 76.0 | 7.00e-01 | 100.0% | 84.5% |
| 3933916 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 75.0 | 6.64e-01 | 98.4% | 73.5% |
| 3758929 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.80 | 73.0 | 7.24e-01 | 100.0% | 93.1% |
| 3937255 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 75.0 | 6.94e-01 | 98.4% | 80.7% |
| 3617194 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.80 | 72.0 | 7.07e-01 | 100.0% | 90.8% |
| 3764166 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.80 | 75.0 | 6.19e-01 | 100.0% | 73.2% |
| 3499933 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.79 | 71.0 | 7.00e-01 | 100.0% | 90.8% |
| 3489902 | 864.1.1.8 ↗ | a+b two layers › DLC › DLC › DLC › CEP76_C | 0.79 | 71.0 | 7.00e-01 | 100.0% | 90.8% |
| 3937257 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.79 | 76.0 | 7.04e-01 | 100.0% | 84.0% |
| 3718069 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.79 | 75.0 | 6.91e-01 | 100.0% | 97.4% |
| 3936410 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.79 | 75.0 | 6.22e-01 | 99.2% | 63.3% |
| 3932803 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.79 | 75.0 | 6.47e-01 | 100.0% | 70.0% |
| 3614061 | 864.1.1.8 ↗ | a+b two layers › DLC › DLC › DLC › CEP76_C | 0.78 | 73.0 | 6.97e-01 | 100.0% | 92.3% |
| 3588250 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.78 | 74.0 | 6.87e-01 | 100.0% | 93.3% |
| 4028720 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.77 | 71.0 | 7.01e-01 | 100.0% | 94.6% |
| 1245579 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.76 | 71.0 | 6.19e-01 | 100.0% | 68.2% |
| 3545384 | 3602.1.1.11 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › CEP76_C | 0.76 | 70.0 | 6.90e-01 | 100.0% | 93.1% |
| 3216970 | 864.1.1.5 ↗ | a+b two layers › DLC › DLC › DLC › DUF684 | 0.70 | 46.0 | 5.35e-01 | 79.8% | 96.5% |
| 3491163 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.67 | 52.0 | 5.17e-01 | 80.6% | 96.1% |
| 3492449 | 256.1.1.9 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 | 0.65 | 38.0 | 4.78e-01 | 84.7% | 97.3% |
| 4616084 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.64 | 49.0 | 5.23e-01 | 82.3% | 98.2% |
| 3719272 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.63 | 34.0 | 4.43e-01 | 83.1% | 94.3% |
| 5000462 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.61 | 35.0 | 4.25e-01 | 84.7% | 87.5% |
| 4525456 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.61 | 50.0 | 5.24e-01 | 90.3% | 97.4% |
| 5006044 | 206.1.1.268 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF6206 | 0.54 | 41.0 | 3.11e-01 | 79.0% | 34.6% |
| 3698884 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.51 | 35.0 | 3.59e-01 | 83.1% | 74.8% |