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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00121

Bact-Vir

SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00121

Identity

Kingdom:
phage

Quality

79.3 mean pLDDT

Cluster

View cluster (16 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-109
PDB
Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00670__D5-100
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.94 89.0 8.57e-01 100.0% 89.6%
2nysA00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.78 72.0 6.73e-01 100.0% 87.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.88e-01 88.7% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.65 45.0 4.56e-01 95.9% 72.6%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 42.0 4.72e-01 91.8% 97.0%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 36.0 4.12e-01 73.2% 80.3%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.62 31.0 2.62e-01 100.0% 26.6%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 40.0 4.40e-01 78.4% 85.3%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 31.0 3.96e-01 88.7% 100.0%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 36.0 3.72e-01 84.5% 71.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 31.0 3.60e-01 73.2% 91.1%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 36.0 3.84e-01 75.3% 100.0%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 34.0 3.48e-01 84.5% 73.6%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 35.0 3.75e-01 72.2% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
605 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.94 89.0 8.57e-01 100.0% 89.6%
165392 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.78 72.0 6.70e-01 100.0% 84.2%
4282868 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 46.0 5.25e-01 89.7% 94.3%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.69e-01 94.8% 73.3%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.68 46.0 5.11e-01 92.8% 91.9%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 48.0 5.03e-01 91.8% 81.1%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 5.07e-01 89.7% 91.9%
4946028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 45.0 4.63e-01 90.7% 74.4%
4937705 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 46.0 4.73e-01 95.9% 76.7%
5011500 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.66 47.0 4.67e-01 93.8% 72.0%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.66 36.0 4.18e-01 70.1% 76.9%
4946972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.56e-01 89.7% 74.4%
5050368 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 47.0 4.69e-01 97.9% 75.5%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.63 45.0 4.72e-01 89.7% 83.5%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 46.0 4.60e-01 93.8% 75.0%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 37.0 4.12e-01 83.5% 74.7%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 46.0 4.70e-01 94.8% 81.1%
3497738 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 37.0 3.34e-01 83.5% 50.0%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.64e-01 81.4% 64.8%
3925891 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.91e-01 84.5% 77.8%
3588663 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 41.0 4.14e-01 79.4% 100.0%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 36.0 2.28e-01 87.6% 13.9%
5027635 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 31.0 2.99e-01 84.5% 50.0%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.52 35.0 3.37e-01 84.5% 60.0%
5061515 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 4.02e-01 84.5% 82.9%
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.99e-01 88.7% 86.7%
3602276 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.50 35.0 3.14e-01 71.1% 71.9%
3692799 2003.1.2.65 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, Pyr_redox_3 0.50 37.0 2.35e-01 78.4% 70.1%
4322675 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.50 36.0 3.47e-01 74.2% 78.2%
D2 medium residues 116-146
PDB