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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00220
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00220
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-122
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 53.0 | 6.28e-01 | 71.2% | 90.2% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 50.0 | 5.65e-01 | 72.9% | 81.3% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 48.0 | 5.32e-01 | 75.4% | 74.7% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 51.0 | 5.47e-01 | 78.8% | 77.9% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 47.0 | 5.31e-01 | 73.7% | 82.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 53.0 | 6.00e-01 | 85.6% | 94.4% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 56.0 | 6.03e-01 | 89.0% | 93.2% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 55.0 | 5.85e-01 | 83.1% | 88.7% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.74e-01 | 85.6% | 83.3% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 53.0 | 5.68e-01 | 83.9% | 90.3% |
| 7jgsG02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 53.0 | 5.76e-01 | 81.4% | 96.9% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 5.38e-01 | 80.5% | 100.0% |
| 2p6rA03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.67 | 51.0 | 4.05e-01 | 78.0% | 50.9% |
| 1t0fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 5.02e-01 | 94.9% | 88.9% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 5.03e-01 | 88.1% | 78.7% |
| 3bpvA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 5.09e-01 | 86.4% | 82.5% |
| 1d8jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 43.0 | 5.00e-01 | 72.9% | 98.8% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 4.80e-01 | 88.1% | 72.7% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.69e-01 | 87.3% | 70.7% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 5.07e-01 | 82.2% | 91.2% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.72e-01 | 87.3% | 70.4% |
| 4z4qA04 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.62 | 37.0 | 4.17e-01 | 90.7% | 78.7% |
| 3zmdA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.53e-01 | 87.3% | 68.2% |
| 1zcjA04 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.59 | 38.0 | 4.03e-01 | 88.1% | 72.9% |
| 1j2zA02 | 1.20.1180.10 | Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain | 0.57 | 33.0 | 4.22e-01 | 83.1% | 100.0% |
| 5tt5A05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 33.0 | 3.81e-01 | 89.8% | 88.3% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.24e-01 | 87.3% | 76.1% |
| 1x9fC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 38.0 | 3.54e-01 | 73.7% | 73.2% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2601 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.85 | 53.0 | 6.28e-01 | 71.2% | 90.2% |
| 3571824 | 101.1.2.601 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH | 0.85 | 55.0 | 4.39e-01 | 71.2% | 36.3% |
| 5022580 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 51.0 | 5.85e-01 | 77.1% | 81.1% |
| 5002434 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 50.0 | 6.23e-01 | 81.4% | 96.0% |
| 3285394 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.78 | 50.0 | 6.03e-01 | 74.6% | 95.0% |
| 5004231 | 101.1.2.896 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2551 | 0.78 | 53.0 | 5.86e-01 | 84.7% | 86.3% |
| 5041408 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 51.0 | 4.31e-01 | 74.6% | 42.7% |
| 4593646 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 52.0 | 5.96e-01 | 76.3% | 90.0% |
| 2602 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.77 | 53.0 | 5.26e-01 | 78.8% | 68.0% |
| 5013516 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 49.0 | 5.47e-01 | 83.1% | 81.1% |
| 4524417 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 52.0 | 5.84e-01 | 81.4% | 88.3% |
| 5041057 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 51.0 | 5.69e-01 | 72.9% | 85.3% |
| 4951019 | 101.1.2.896 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2551 | 0.75 | 50.0 | 5.53e-01 | 78.0% | 84.2% |
| 4068860 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.75 | 51.0 | 5.14e-01 | 77.1% | 68.3% |
| 3504010 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.74 | 59.0 | 4.26e-01 | 82.2% | 60.7% |
| 4945099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 56.0 | 5.50e-01 | 85.6% | 73.6% |
| 5027342 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 50.0 | 5.57e-01 | 76.3% | 86.3% |
| 4478972 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.73 | 58.0 | 5.98e-01 | 88.1% | 88.2% |
| 3718412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 55.0 | 3.96e-01 | 78.0% | 32.5% |
| 3602673 | 2004.1.1.1085 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30184 | 0.73 | 52.0 | 5.38e-01 | 78.0% | 78.2% |
| 5076520 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 49.0 | 5.31e-01 | 78.0% | 81.0% |
| 5014314 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.72 | 51.0 | 5.81e-01 | 76.3% | 95.6% |
| 5055112 | 101.1.2.927 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7347 | 0.72 | 48.0 | 5.30e-01 | 78.8% | 83.2% |
| 4976218 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.72 | 59.0 | 5.87e-01 | 86.4% | 83.3% |
| 3867108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 51.0 | 4.86e-01 | 72.0% | 77.0% |
| 3473498 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 50.0 | 5.77e-01 | 78.8% | 98.8% |
| 3465917 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 45.0 | 2.91e-01 | 73.7% | 15.4% |
| 4968278 | 101.1.2.554 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30184 | 0.72 | 50.0 | 5.78e-01 | 71.2% | 98.8% |
| 4946699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 49.0 | 5.62e-01 | 82.2% | 93.3% |
| 3238922 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 65.0 | 4.93e-01 | 97.5% | 87.8% |
| 4971686 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.71 | 54.0 | 5.74e-01 | 83.9% | 90.5% |
| 4032381 | 101.1.2.231 ↗ | alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot | 0.71 | 55.0 | 5.62e-01 | 81.4% | 86.1% |
| 3269500 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 49.0 | 5.33e-01 | 78.8% | 84.8% |
| 3784677 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.71 | 49.0 | 3.90e-01 | 70.3% | 42.7% |
| 5045747 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.70 | 48.0 | 5.46e-01 | 78.0% | 92.2% |
| 5036586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 49.0 | 5.65e-01 | 78.8% | 98.8% |
| 4625648 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.70 | 54.0 | 5.67e-01 | 83.1% | 89.0% |
| 4969948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 5.08e-01 | 84.7% | 80.0% |
| 3727445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 5.12e-01 | 75.4% | 81.0% |
| 5064993 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.69 | 56.0 | 5.61e-01 | 86.4% | 94.2% |
| 3321732 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 51.0 | 5.47e-01 | 82.2% | 90.0% |
| 4927637 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 47.0 | 4.02e-01 | 78.8% | 44.9% |
| 4970991 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 4.70e-01 | 89.0% | 67.2% |
| 3227729 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.69 | 51.0 | 5.46e-01 | 78.0% | 91.4% |
| 5035685 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.68 | 53.0 | 5.25e-01 | 83.9% | 77.4% |
| 3735293 | 101.1.2.312 ↗ | alpha arrays › HTH › HTH › winged helix domain › MSC | 0.68 | 51.0 | 3.88e-01 | 78.0% | 49.2% |
| 4672256 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.68 | 53.0 | 5.42e-01 | 82.2% | 87.0% |
| 3586609 | 101.1.2.278 ↗ | alpha arrays › HTH › HTH › winged helix domain › CNDH2_C | 0.67 | 49.0 | 4.98e-01 | 81.4% | 75.6% |
| 4404596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 48.0 | 4.63e-01 | 82.2% | 66.2% |
| 5021067 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 53.0 | 5.61e-01 | 82.2% | 94.3% |
| 5077022 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.67 | 53.0 | 5.79e-01 | 90.7% | 99.0% |
| 5033207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 54.0 | 5.31e-01 | 84.7% | 93.6% |
| 3587913 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.67 | 51.0 | 4.96e-01 | 78.8% | 73.1% |
| 3989662 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.67 | 53.0 | 5.20e-01 | 82.2% | 79.2% |
| 4203701 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.66 | 52.0 | 5.03e-01 | 82.2% | 77.5% |
| 5054914 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 49.0 | 5.15e-01 | 89.8% | 83.6% |
| 4971669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 46.0 | 4.36e-01 | 86.4% | 59.3% |
| 4963760 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 46.0 | 5.06e-01 | 81.4% | 89.5% |
| 4979355 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 4.87e-01 | 91.5% | 80.0% |
| 4358890 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.65 | 51.0 | 5.24e-01 | 82.2% | 87.8% |
| 4941556 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 50.0 | 5.31e-01 | 81.4% | 89.4% |
| 3934187 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 4.37e-01 | 72.0% | 68.9% |
| 3781990 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 44.0 | 5.06e-01 | 78.0% | 98.8% |
| 3889516 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.64 | 46.0 | 4.84e-01 | 78.0% | 82.9% |
| 3739375 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.63 | 49.0 | 4.88e-01 | 88.1% | 78.4% |
| 4175293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 44.0 | 5.02e-01 | 72.9% | 100.0% |
| 4983791 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.63 | 49.0 | 4.75e-01 | 81.4% | 76.2% |
| 3720812 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 52.0 | 5.45e-01 | 89.0% | 95.5% |
| 4605893 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.62 | 51.0 | 4.83e-01 | 87.3% | 79.3% |
| 3501333 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.61 | 47.0 | 4.79e-01 | 81.4% | 93.0% |
| 4011031 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.61 | 46.0 | 4.40e-01 | 91.5% | 66.4% |
| 5034596 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 48.0 | 4.59e-01 | 82.2% | 74.1% |
| 4953119 | 101.1.2.805 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF26350 | 0.54 | 44.0 | 3.86e-01 | 89.0% | 57.2% |
| 3252984 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 35.0 | 3.96e-01 | 73.7% | 86.7% |