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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00284
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00284
Identity
- Kingdom:
- phage
Quality
79.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 100-141
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bjmC00 | 1.20.58.1680 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.81 | 68.0 | 4.32e-01 | 100.0% | 35.8% |
| 1avoB00 | 1.20.120.180 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain | 0.74 | 60.0 | 4.16e-01 | 90.5% | 53.6% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.72 | 59.0 | 5.06e-01 | 100.0% | 89.3% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 57.0 | 4.87e-01 | 92.9% | 80.9% |
| 1b0zA02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.65 | 48.0 | 3.19e-01 | 81.0% | 47.8% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.63 | 47.0 | 4.07e-01 | 85.7% | 50.0% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.62 | 54.0 | 4.26e-01 | 100.0% | 74.2% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.60 | 42.0 | 3.26e-01 | 73.8% | 58.2% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 44.0 | 3.05e-01 | 90.5% | 23.6% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 42.0 | 3.31e-01 | 76.2% | 36.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929706 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.75 | 64.0 | 5.49e-01 | 100.0% | 95.7% |
| 3494018 | 137.1.1.1 ↗ | alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › bZIP_Maf | 0.70 | 62.0 | 5.51e-01 | 100.0% | 83.3% |
| 3258043 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.69 | 57.0 | 4.23e-01 | 92.9% | 68.2% |
| 137226 | 2003.1.5.201 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25, Methyltransf_31 | 0.69 | 57.0 | 3.55e-01 | 100.0% | 90.6% |
| 5037576 | 2500.1.1.0 ↗ | a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel | 0.67 | 58.0 | 3.28e-01 | 97.6% | 51.3% |
D2
medium
residues 193-293
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ciuA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.73 | 52.0 | 4.22e-01 | 75.2% | 59.9% |
| 1wdzA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.66 | 48.0 | 3.58e-01 | 74.3% | 36.8% |
| 4n1yB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.61 | 48.0 | 3.73e-01 | 86.1% | 93.4% |
| 1olmC01 | 3.40.525.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain | 0.58 | 44.0 | 3.14e-01 | 79.2% | 45.9% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 43.0 | 4.80e-01 | 86.1% | 100.0% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 50.0 | 3.77e-01 | 97.0% | 84.3% |
| 1orsC00 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.56 | 44.0 | 4.08e-01 | 84.2% | 69.7% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.54 | 42.0 | 3.84e-01 | 83.2% | 65.4% |
| 3behB01 | 1.20.120.540 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels | 0.52 | 38.0 | 3.64e-01 | 77.2% | 73.5% |
| 1jogA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 38.0 | 3.47e-01 | 77.2% | 80.0% |
| 7bqiA01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.52 | 37.0 | 3.25e-01 | 73.3% | 68.2% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 37.0 | 2.79e-01 | 78.2% | 42.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4036645 | 5086.1.1.92 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AprE | 0.77 | 55.0 | 4.36e-01 | 74.3% | 72.8% |
| 5005724 | 3755.3.1.637 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF7121 | 0.70 | 56.0 | 4.24e-01 | 86.1% | 38.3% |
| 3275837 | 5039.1.1.1 ↗ | alpha bundles › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › Cytochrome c oxidase subunit III-like › COX3 | 0.65 | 56.0 | 4.02e-01 | 93.1% | 34.4% |
| None | — | 0.63 | 44.0 | 3.52e-01 | 75.2% | 38.4% | |
| 3239667 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 51.0 | 3.11e-01 | 100.0% | 24.1% |
| 3393914 | 5054.1.1.9 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › PKD_channel | 0.58 | 50.0 | 3.62e-01 | 95.0% | 35.0% |
| 3473769 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.56 | 50.0 | 3.74e-01 | 98.0% | 81.6% |
| 3720652 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.55 | 50.0 | 3.73e-01 | 100.0% | 91.4% |