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SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00286
Bact-VirSR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
78.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-86
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mhsB00 | 1.10.246.140 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 | 0.78 | 54.0 | 4.76e-01 | 71.2% | 54.9% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 61.0 | 6.47e-01 | 93.9% | 100.0% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.75 | 61.0 | 5.35e-01 | 92.4% | 60.0% |
| 3d5lA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 54.0 | 5.83e-01 | 93.9% | 100.0% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.72 | 62.0 | 5.37e-01 | 100.0% | 65.7% |
| 4ixjA01 | 3.30.1300.80 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.65 | 53.0 | 5.05e-01 | 100.0% | 77.9% |
| 2zgyA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 45.0 | 3.53e-01 | 100.0% | 35.0% |
| 3q1pA01 | 6.10.250.1120 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 35.0 | 4.34e-01 | 92.4% | 92.3% |
| 3sqnA03 | 1.10.1790.30 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › | 0.62 | 53.0 | 4.45e-01 | 98.5% | 86.4% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.61 | 46.0 | 4.30e-01 | 84.8% | 69.0% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.60 | 52.0 | 4.70e-01 | 97.0% | 81.1% |
| 6ircA01 | 1.20.1230.10 | Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain | 0.60 | 47.0 | 3.42e-01 | 89.4% | 99.0% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 43.0 | 4.30e-01 | 100.0% | 77.6% |
| 3k6hA01 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.59 | 43.0 | 3.33e-01 | 81.8% | 83.8% |
| 1c02A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 48.0 | 3.74e-01 | 97.0% | 97.0% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 45.0 | 4.42e-01 | 84.8% | 83.1% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.58 | 41.0 | 3.74e-01 | 77.3% | 54.3% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 38.0 | 3.89e-01 | 100.0% | 70.3% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 41.0 | 3.74e-01 | 75.8% | 70.3% |
| 1elkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 44.0 | 3.41e-01 | 97.0% | 36.6% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.55 | 39.0 | 3.66e-01 | 78.8% | 63.6% |
| 3v5uA02 | 1.20.1420.30 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region | 0.55 | 48.0 | 3.37e-01 | 100.0% | 53.8% |
| 2epkX03 | 1.20.120.670 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › N-acetyl-b-d-glucoasminidase | 0.54 | 45.0 | 3.21e-01 | 98.5% | 67.0% |
| 3ro3A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 37.0 | 2.86e-01 | 75.8% | 30.2% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 43.0 | 4.06e-01 | 93.9% | 83.5% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.53 | 39.0 | 3.72e-01 | 80.3% | 65.4% |
| 3tahA02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.76e-01 | 86.4% | 85.2% |
| 2fbnA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 42.0 | 3.23e-01 | 89.4% | 38.6% |
| 2oo2A00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.52 | 36.0 | 3.53e-01 | 80.3% | 65.8% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.52 | 37.0 | 3.36e-01 | 78.8% | 55.2% |
| 3ezhA00 | 1.20.120.960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain | 0.50 | 39.0 | 3.38e-01 | 89.4% | 57.9% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.50 | 40.0 | 3.44e-01 | 86.4% | 67.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082325 | 3705.1.1.3 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 | 0.87 | 79.0 | 7.76e-01 | 100.0% | 95.7% |
| 3657981 | 198.1.1.16 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 | 0.80 | 73.0 | 6.85e-01 | 100.0% | 83.7% |
| 3391605 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 67.0 | 6.76e-01 | 97.0% | 95.4% |
| 4589278 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.78 | 70.0 | 5.98e-01 | 100.0% | 62.9% |
| 1068638 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.77 | 61.0 | 6.47e-01 | 93.9% | 100.0% |
| 4560206 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.77 | 66.0 | 6.03e-01 | 98.5% | 72.2% |
| 3928495 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.74 | 60.0 | 5.32e-01 | 87.9% | 67.4% |
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.74 | 62.0 | 4.83e-01 | 92.4% | 52.9% |
| 3452645 | 101.35.1.31 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Gliadin | 0.73 | 62.0 | 5.53e-01 | 97.0% | 67.4% |
| 5025586 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.72 | 59.0 | 5.66e-01 | 86.4% | 90.7% |
| 3204262 | 5051.1.1.15 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › K_trans | 0.71 | 51.0 | 3.28e-01 | 75.8% | 42.0% |
| 3673670 | 639.2.1.4 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › Ovate | 0.71 | 59.0 | 5.98e-01 | 100.0% | 92.3% |
| 3952621 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.71 | 59.0 | 5.88e-01 | 100.0% | 91.3% |
| 3879806 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.63 | 56.0 | 5.06e-01 | 100.0% | 87.8% |
| 3988277 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.63 | 48.0 | 3.17e-01 | 84.8% | 53.2% |
| 3554536 | 194.1.1.1 ↗ | alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin | 0.62 | 54.0 | 3.87e-01 | 98.5% | 76.4% |
| 4561057 | 5041.1.1.41 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › prePAAR_I | 0.62 | 50.0 | 5.01e-01 | 93.9% | 98.6% |
| 3939027 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.60 | 51.0 | 3.19e-01 | 100.0% | 16.0% |
| 3485616 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.60 | 39.0 | 3.96e-01 | 77.3% | 67.7% |
| 4024699 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.58 | 43.0 | 3.33e-01 | 78.8% | 86.9% |
| 4061485 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.57 | 47.0 | 3.64e-01 | 100.0% | 40.0% |
| 3531615 | 601.48.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain | 0.56 | 38.0 | 4.02e-01 | 95.5% | 78.3% |
| 3522738 | 109.4.1.2421 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26718 | 0.56 | 42.0 | 3.42e-01 | 97.0% | 41.5% |
| 3838014 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 39.0 | 3.08e-01 | 87.9% | 35.6% |
| 2142296 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.54 | 40.0 | 3.53e-01 | 80.3% | 68.4% |
| 4174467 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.54 | 37.0 | 3.34e-01 | 71.2% | 63.3% |
| 2323907 | 212.1.1.24 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 | 0.54 | 45.0 | 3.20e-01 | 100.0% | 74.4% |
| 3610233 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 42.0 | 3.52e-01 | 90.9% | 70.4% |
| 5074606 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.52 | 43.0 | 3.78e-01 | 92.4% | 89.0% |
| 4939273 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 40.0 | 3.99e-01 | 83.3% | 81.4% |
| 5023287 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 38.0 | 3.76e-01 | 81.8% | 75.7% |
| 3175481 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.52 | 42.0 | 3.22e-01 | 97.0% | 67.8% |
| 3554762 | 109.4.1.1832 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_17, TPR_16 | 0.51 | 41.0 | 2.87e-01 | 92.4% | 38.0% |
| 5049135 | 109.7.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E | 0.51 | 37.0 | 3.72e-01 | 86.4% | 74.3% |
| 3779604 | 109.4.1.1513 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_17 | 0.51 | 42.0 | 3.03e-01 | 93.9% | 46.8% |
| 143387 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.51 | 40.0 | 3.47e-01 | 90.9% | 78.8% |
| 4946099 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.51 | 38.0 | 3.66e-01 | 87.9% | 73.5% |
| 5054531 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 38.0 | 3.34e-01 | 86.4% | 54.0% |
| 3349750 | 3567.1.1.75 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA | 0.50 | 44.0 | 3.13e-01 | 100.0% | 66.2% |
| 4933335 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.50 | 38.0 | 3.60e-01 | 81.8% | 75.0% |
| 3773235 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.50 | 40.0 | 3.69e-01 | 89.4% | 67.8% |