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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00113
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00113
Identity
- Kingdom:
- phage
Quality
84.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-123
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.84 | 79.0 | 6.77e-01 | 100.0% | 71.0% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 75.0 | 6.42e-01 | 100.0% | 68.4% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 73.0 | 6.47e-01 | 100.0% | 69.6% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.79 | 74.0 | 6.35e-01 | 100.0% | 67.9% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 66.0 | 5.96e-01 | 100.0% | 68.9% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 38.0 | 4.01e-01 | 100.0% | 79.8% |
| 1yz7A02 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.55 | 38.0 | 4.38e-01 | 88.5% | 96.7% |
| 2ahoB03 | 3.30.70.1130 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha | 0.53 | 37.0 | 4.30e-01 | 84.4% | 100.0% |
| 1j27A00 | 3.30.70.1120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TT1725-like | 0.52 | 38.0 | 4.18e-01 | 91.8% | 92.9% |
| 5x8tT00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 30.0 | 2.86e-01 | 94.3% | 45.1% |
| 3nwgA02 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.51 | 37.0 | 4.07e-01 | 96.7% | 93.1% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 36.0 | 3.48e-01 | 100.0% | 64.5% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 28.0 | 3.40e-01 | 82.8% | 88.9% |
| 2jovA01 | 3.10.530.10 | Alpha Beta › Roll › CPE0013-like fold › CPE0013-like | 0.50 | 28.0 | 3.51e-01 | 98.4% | 93.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 79.0 | 6.77e-01 | 100.0% | 71.0% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 79.0 | 6.79e-01 | 100.0% | 68.7% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 78.0 | 6.70e-01 | 100.0% | 70.0% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 78.0 | 6.65e-01 | 100.0% | 68.6% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 77.0 | 6.24e-01 | 100.0% | 72.9% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 77.0 | 6.53e-01 | 100.0% | 68.1% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 77.0 | 6.69e-01 | 100.0% | 72.6% |
| None | — | 0.81 | 76.0 | 6.57e-01 | 100.0% | 69.4% | |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.81 | 76.0 | 6.38e-01 | 100.0% | 66.2% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 77.0 | 6.62e-01 | 100.0% | 68.5% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 75.0 | 6.47e-01 | 100.0% | 70.5% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 67.0 | 6.03e-01 | 100.0% | 65.5% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 75.0 | 6.49e-01 | 100.0% | 69.4% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.80 | 75.0 | 6.30e-01 | 100.0% | 66.7% |
| None | — | 0.79 | 74.0 | 6.35e-01 | 100.0% | 67.9% | |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 73.0 | 6.40e-01 | 100.0% | 69.5% |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 72.0 | 6.05e-01 | 100.0% | 67.0% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 6.25e-01 | 100.0% | 71.1% |
| 3216833 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 71.0 | 5.82e-01 | 100.0% | 67.0% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.77 | 72.0 | 5.92e-01 | 100.0% | 66.3% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 72.0 | 5.94e-01 | 100.0% | 61.5% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 71.0 | 6.06e-01 | 98.4% | 65.4% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 71.0 | 6.14e-01 | 100.0% | 66.8% |
| 2773887 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.77 | 71.0 | 5.78e-01 | 100.0% | 67.4% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.10e-01 | 100.0% | 69.6% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 71.0 | 6.16e-01 | 100.0% | 67.8% |
| 3616225 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 70.0 | 5.70e-01 | 100.0% | 64.1% |
| 3738455 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 69.0 | 5.84e-01 | 100.0% | 66.7% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.72 | 66.0 | 5.79e-01 | 100.0% | 68.6% |
| 4079239 | 264.1.1.4 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › CPDase | 0.70 | 65.0 | 5.50e-01 | 100.0% | 68.4% |
| 5035224 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.55 | 37.0 | 4.25e-01 | 95.1% | 93.3% |
| 4478614 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 34.0 | 3.98e-01 | 95.1% | 87.5% |
| 5047792 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 36.0 | 3.83e-01 | 73.0% | 79.0% |
| 4634052 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.54 | 35.0 | 4.11e-01 | 95.9% | 93.2% |
| 4993981 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.53 | 29.0 | 3.45e-01 | 91.0% | 78.8% |
| 5081005 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.52 | 34.0 | 4.03e-01 | 74.6% | 97.6% |
| 3486397 | 304.16.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like | 0.52 | 35.0 | 3.99e-01 | 95.9% | 93.3% |
| 4948334 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.52 | 34.0 | 3.98e-01 | 95.9% | 94.3% |
| 4047960 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.52 | 34.0 | 3.99e-01 | 95.9% | 96.5% |
| 5038047 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.51 | 33.0 | 3.93e-01 | 96.7% | 96.4% |
| 4938292 | 304.28.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain | 0.51 | 37.0 | 4.16e-01 | 95.1% | 97.9% |
| 5062146 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.51 | 33.0 | 3.90e-01 | 74.6% | 96.4% |
| 4000519 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 37.0 | 4.15e-01 | 97.5% | 96.8% |
| 3268447 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.50 | 38.0 | 4.05e-01 | 85.2% | 91.4% |