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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00131

Bact-Vir

SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00131

Identity

Kingdom:
phage

Quality

93.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 55-111_194-234_262-314
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uumA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.75 71.0 5.25e-01 99.3% 94.0%
6e0bA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 70.0 5.10e-01 99.3% 93.6%
6b8sA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 69.0 5.20e-01 99.3% 95.2%
1ep3A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 66.0 5.05e-01 96.0% 88.1%
1gteB05 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 63.0 4.92e-01 96.7% 91.8%
3vkjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 53.0 3.97e-01 94.0% 92.0%
6dvhB01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 51.0 3.76e-01 92.1% 89.7%
7bsrA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 50.0 3.89e-01 92.1% 95.7%
1qcwA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 50.0 3.77e-01 92.1% 87.7%
1qo2A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 50.0 4.23e-01 94.7% 97.1%
2j6xH00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 51.0 3.90e-01 99.3% 96.3%
1jqxA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 51.0 4.11e-01 96.0% 88.8%
3l5lA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 49.0 3.66e-01 96.0% 88.9%
2qddA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.55 40.0 3.47e-01 76.8% 74.8%
2yx0A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 42.0 3.31e-01 80.8% 92.9%
1vcfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 49.0 3.93e-01 98.7% 82.2%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 48.0 4.19e-01 96.0% 96.5%
3zmrB02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 41.0 3.07e-01 78.8% 75.6%
1vh7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 49.0 4.11e-01 97.4% 95.2%
1geqB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 47.0 3.93e-01 93.4% 94.7%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 44.0 3.67e-01 88.1% 77.6%
5k9xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 48.0 3.97e-01 97.4% 90.4%
3tdnA00 3.40.50.12600 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 34.0 3.83e-01 75.5% 81.8%
3l5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 46.0 3.41e-01 94.0% 81.8%
3tsmA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 44.0 3.66e-01 89.4% 77.8%
1eepA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 48.0 3.73e-01 98.7% 81.2%
3vk5B00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.52 45.0 3.71e-01 90.7% 90.1%
1a5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 46.0 3.86e-01 96.0% 90.2%
7fevA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 3.25e-01 94.0% 79.0%
1ea0B03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 46.0 3.39e-01 99.3% 75.1%
3mwcA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.51 38.0 3.26e-01 78.8% 60.1%
5tcgA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.84e-01 96.7% 89.6%
1znnA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 3.75e-01 93.4% 91.8%
1vhnA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 44.0 3.78e-01 92.7% 94.0%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 42.0 3.55e-01 89.4% 77.6%
2f6uA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.51 44.0 3.85e-01 95.4% 85.7%
3sr7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 44.0 3.59e-01 94.0% 78.8%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962473 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.80 69.0 5.18e-01 88.7% 97.5%
3631489 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.78 68.0 4.71e-01 91.4% 89.3%
4517677 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.77 69.0 5.24e-01 93.4% 100.0%
None 0.76 73.0 5.40e-01 100.0% 95.1%
5030437 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.76 72.0 5.30e-01 99.3% 94.4%
4207012 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.76 72.0 5.21e-01 99.3% 93.9%
3449932 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.75 71.0 5.01e-01 99.3% 85.4%
4932989 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.75 67.0 5.05e-01 92.1% 95.3%
3993577 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.75 71.0 5.09e-01 99.3% 87.1%
4024343 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.74 70.0 4.98e-01 99.3% 89.1%
4030956 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.74 70.0 5.15e-01 99.3% 94.9%
4529198 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.74 70.0 5.17e-01 99.3% 94.6%
4928712 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.74 70.0 5.06e-01 100.0% 93.7%
3600203 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 68.0 5.20e-01 96.7% 90.6%
4586300 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.73 68.0 5.01e-01 97.4% 92.8%
3449031 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.73 66.0 4.79e-01 96.0% 77.9%
None 0.71 65.0 5.02e-01 96.0% 88.1%
5060345 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.70 66.0 5.01e-01 99.3% 90.2%
4015848 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.70 64.0 4.77e-01 97.4% 94.7%
4991958 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.70 65.0 5.04e-01 96.7% 95.3%
None 0.70 63.0 4.85e-01 96.7% 88.6%
3921709 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.70 63.0 4.80e-01 96.7% 85.7%
5051931 2002.1.1.48 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › FMN_dh 0.63 54.0 4.07e-01 90.7% 93.1%
3260627 2002.1.1.54 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHO_dh 0.60 55.0 4.11e-01 98.7% 90.4%
3277707 2002.1.1.70 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glu_synthase 0.59 49.0 3.55e-01 87.4% 97.3%
None 0.59 51.0 3.79e-01 92.1% 91.2%
None 0.58 53.0 4.04e-01 99.3% 91.5%
144257 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.57 51.0 4.34e-01 95.4% 95.9%
5036700 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 50.0 4.18e-01 94.7% 97.2%
4163147 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.29e-01 96.7% 95.5%
4091965 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.22e-01 96.7% 93.7%
4121113 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.35e-01 98.0% 96.7%
4947220 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.17e-01 97.4% 95.2%
None 0.56 52.0 4.21e-01 98.7% 94.4%
4356125 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.12e-01 97.4% 95.3%
4292350 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.22e-01 96.7% 91.4%
None 0.56 50.0 4.24e-01 96.0% 94.3%
4220002 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 50.0 4.23e-01 96.7% 94.8%
4452241 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.28e-01 98.7% 95.3%
None 0.56 52.0 4.25e-01 98.7% 95.0%
None 0.56 50.0 4.25e-01 96.7% 93.9%
4152375 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.17e-01 96.7% 90.4%
None 0.56 51.0 4.27e-01 97.4% 96.3%
4388636 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 51.0 4.37e-01 99.3% 94.6%
4500767 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.56 50.0 4.18e-01 97.4% 94.2%
None 0.55 50.0 4.25e-01 96.7% 96.7%
None 0.55 50.0 4.07e-01 96.7% 88.5%
None 0.55 49.0 4.17e-01 94.0% 96.6%
None 0.55 47.0 3.47e-01 92.1% 86.3%
None 0.55 49.0 4.07e-01 95.4% 90.7%
4669964 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 48.0 4.11e-01 94.0% 96.2%
5007562 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.55 51.0 4.26e-01 97.4% 94.6%
None 0.55 48.0 4.09e-01 92.7% 96.6%
None 0.55 50.0 4.18e-01 98.7% 94.9%
4483471 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.55 50.0 4.11e-01 98.7% 91.3%
None 0.55 46.0 3.71e-01 88.1% 76.4%
None 0.55 50.0 4.17e-01 98.7% 95.7%
3729678 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.54 45.0 3.68e-01 88.1% 76.4%
4557448 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.54 45.0 3.77e-01 88.7% 78.5%
5074084 2002.1.1.56 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus 0.54 50.0 4.11e-01 98.0% 94.9%
None 0.54 49.0 4.14e-01 97.4% 93.9%
4982685 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 49.0 4.08e-01 98.7% 91.9%
None 0.54 48.0 4.04e-01 94.0% 95.0%
5066832 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.54 48.0 4.08e-01 95.4% 96.2%
None 0.54 49.0 4.06e-01 97.4% 94.9%
5003727 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 47.0 3.80e-01 93.4% 77.4%
4618618 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.53 46.0 3.93e-01 94.0% 83.6%
5040829 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.53 48.0 3.92e-01 96.7% 89.3%
4974753 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 46.0 3.79e-01 92.1% 79.2%
5063800 2002.1.1.43 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth 0.53 47.0 4.05e-01 94.7% 97.0%
4327115 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 47.0 3.88e-01 94.7% 79.2%
4215378 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 46.0 3.88e-01 92.1% 82.0%
None 0.53 45.0 3.74e-01 91.4% 77.0%
3948740 2002.1.1.32 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN 0.53 47.0 3.45e-01 94.0% 82.1%
None 0.53 45.0 3.77e-01 91.4% 78.8%
5080787 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 45.0 3.68e-01 89.4% 81.5%
4265682 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.53 44.0 3.63e-01 89.4% 75.2%
4415577 2002.1.1.277 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth, PcrB 0.52 47.0 3.91e-01 95.4% 88.4%
3973507 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 43.0 3.66e-01 88.7% 71.6%
3966488 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 44.0 3.60e-01 90.1% 75.9%
4464139 2002.1.1.10 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IGPS 0.52 43.0 3.57e-01 89.4% 76.9%
5025353 2002.1.1.15 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA 0.52 44.0 3.91e-01 92.1% 94.0%