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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00161
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00161
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 120-175_309-333
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1hbxA01 | 3.40.1810.10 | Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box | 0.54 | 32.0 | 3.34e-01 | 70.4% | 63.4% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 37.0 | 3.28e-01 | 72.8% | 76.5% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 37.0 | 2.55e-01 | 75.3% | 60.1% |
| 1repC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 31.0 | 3.00e-01 | 70.4% | 51.6% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 39.0 | 3.34e-01 | 79.0% | 73.8% |
| 1g9mG00 | 2.170.40.20 | Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein | 0.51 | 36.0 | 2.40e-01 | 72.8% | 73.4% |
| 3ke2B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.32e-01 | 71.6% | 69.8% |
| 1fpqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.13e-01 | 76.5% | 58.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5056444 | 2002.1.1.29 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS | 0.59 | 43.0 | 2.89e-01 | 77.8% | 95.1% |
| 3821254 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.58 | 40.0 | 3.48e-01 | 87.7% | 46.4% |
| 3939904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 44.0 | 2.73e-01 | 85.2% | 28.1% |
| 4929793 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 3.32e-01 | 74.1% | 81.4% |
| 5051877 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 38.0 | 3.22e-01 | 71.6% | 43.1% |
| 4017509 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 38.0 | 3.17e-01 | 70.4% | 42.1% |
| 4272772 | 3281.1.1.3 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C | 0.55 | 47.0 | 2.81e-01 | 100.0% | 57.4% |
| 4315272 | 3281.1.1.3 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C | 0.54 | 46.0 | 2.77e-01 | 100.0% | 60.4% |
| 5039825 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.53 | 37.0 | 3.16e-01 | 71.6% | 48.0% |
| 4929294 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 35.0 | 2.80e-01 | 72.8% | 56.1% |
| 4785121 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.51 | 38.0 | 3.88e-01 | 96.3% | 82.7% |
| 4002047 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 35.0 | 2.32e-01 | 71.6% | 85.5% |
| 5063921 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.51 | 34.0 | 3.13e-01 | 71.6% | 51.8% |
| 4233442 | 304.4.1.54 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Amnionless | 0.50 | 37.0 | 3.30e-01 | 79.0% | 70.8% |
| 4970452 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.50 | 34.0 | 3.11e-01 | 71.6% | 53.3% |
D2
medium
residues 176-237
D3
medium
residues 238-308
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00209__D198-257
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xi7A00 | 4.10.40.20 | Few Secondary Structures › Irregular › Omega-AgatoxinV › | 0.56 | 30.0 | 3.43e-01 | 90.1% | 72.3% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.54 | 28.0 | 3.28e-01 | 91.5% | 72.7% |
| 5m07A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 3.96e-01 | 94.4% | 81.3% |
| 1dkqA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 40.0 | 3.37e-01 | 88.7% | 53.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.69 | 36.0 | 3.81e-01 | 98.6% | 55.4% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.58 | 30.0 | 3.59e-01 | 95.8% | 75.0% |
| 4998317 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 44.0 | 3.18e-01 | 88.7% | 51.1% |
| 5017728 | 4967.1.1.11 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM | 0.56 | 41.0 | 3.62e-01 | 80.3% | 88.5% |
| 4999142 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 43.0 | 3.30e-01 | 85.9% | 93.9% |
| 3853232 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.55 | 34.0 | 3.16e-01 | 94.4% | 46.3% |
| 3598685 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.55 | 40.0 | 3.48e-01 | 80.3% | 66.1% |
| 5051762 | 873.1.1.13 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › ATC_hydrolase | 0.54 | 46.0 | 3.63e-01 | 97.2% | 51.0% |
| 5069807 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 46.0 | 3.56e-01 | 100.0% | 50.3% |
| 3612241 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.33e-01 | 98.6% | 81.2% |
| 4971706 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 43.0 | 3.30e-01 | 100.0% | 56.8% |
| 4019596 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 42.0 | 3.12e-01 | 94.4% | 37.1% |
| 4422273 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.50 | 40.0 | 2.89e-01 | 91.5% | 75.7% |
D4
medium
residues 362-414