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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00181
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00181
Identity
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-171
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13177.13 best | DNA_pol3_delta2 | 77.0 | 2.30e-21 | 91.1% | 84.5% |
| PF00004.36 | AAA | 35.7 | 1.50e-08 | 78.1% | 95.4% |
D2
high
residues 177-230
Domain cluster:
representative
CATH (60)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iqpA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.94 | 88.0 | 8.24e-01 | 100.0% | 85.9% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.93 | 85.0 | 8.03e-01 | 100.0% | 89.1% |
| 6vvoC02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.92 | 85.0 | 7.99e-01 | 100.0% | 85.9% |
| 1njgB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.92 | 85.0 | 7.58e-01 | 100.0% | 76.7% |
| 3bosA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.90 | 83.0 | 7.67e-01 | 100.0% | 88.1% |
| 1sxjD02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.90 | 82.0 | 7.50e-01 | 100.0% | 87.1% |
| 3u60E02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.90 | 79.0 | 7.64e-01 | 94.4% | 88.1% |
| 3zh9B02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.90 | 82.0 | 7.45e-01 | 100.0% | 82.9% |
| 1sxjC02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.89 | 80.0 | 7.39e-01 | 100.0% | 87.0% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.88 | 62.0 | 4.74e-01 | 85.2% | 35.1% |
| 1a5tA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.87 | 60.0 | 6.76e-01 | 81.5% | 97.5% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 78.0 | 6.73e-01 | 100.0% | 73.5% |
| 1jqjD03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 77.0 | 6.60e-01 | 100.0% | 66.3% |
| 5vjhB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.85 | 76.0 | 6.32e-01 | 100.0% | 79.3% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.85 | 75.0 | 6.50e-01 | 100.0% | 73.5% |
| 1hqcA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.84 | 74.0 | 6.66e-01 | 100.0% | 80.3% |
| 6qs7C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.84 | 75.0 | 5.59e-01 | 100.0% | 92.4% |
| 3e46A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.84 | 57.0 | 6.28e-01 | 83.3% | 90.7% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 66.0 | 6.43e-01 | 90.7% | 79.3% |
| 2qhoD00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.83 | 61.0 | 6.38e-01 | 83.3% | 85.7% |
| 2yviA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.82 | 62.0 | 5.14e-01 | 83.3% | 48.3% |
| 3sykA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.82 | 73.0 | 6.13e-01 | 100.0% | 85.6% |
| 1wgnA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.82 | 60.0 | 5.69e-01 | 88.9% | 66.7% |
| 2dnaA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.82 | 62.0 | 5.76e-01 | 94.4% | 65.7% |
| 2lbcA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.81 | 59.0 | 6.02e-01 | 92.6% | 79.2% |
| 2z4sA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.81 | 71.0 | 6.52e-01 | 100.0% | 81.9% |
| 1tr8A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.81 | 54.0 | 6.13e-01 | 77.8% | 97.4% |
| 1dv0A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.80 | 61.0 | 6.53e-01 | 100.0% | 97.8% |
| 1vdlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.79 | 61.0 | 5.36e-01 | 90.7% | 56.2% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.79 | 57.0 | 6.10e-01 | 83.3% | 91.3% |
| 2g3qA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.78 | 55.0 | 5.96e-01 | 88.9% | 93.0% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.78 | 58.0 | 4.84e-01 | 83.3% | 47.3% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 58.0 | 5.44e-01 | 88.9% | 65.7% |
| 1vegA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 57.0 | 6.17e-01 | 98.1% | 100.0% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.77 | 62.0 | 6.06e-01 | 90.7% | 81.4% |
| 7y11B01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.77 | 63.0 | 6.07e-01 | 92.6% | 85.7% |
| 2daiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.76 | 59.0 | 5.15e-01 | 100.0% | 55.4% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.76 | 62.0 | 5.84e-01 | 92.6% | 95.5% |
| 2lvaA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.76 | 54.0 | 5.80e-01 | 85.2% | 93.2% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.76 | 61.0 | 6.09e-01 | 90.7% | 94.7% |
| 1xb2B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 58.0 | 5.66e-01 | 92.6% | 76.7% |
| 3ihpB05 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 60.0 | 6.04e-01 | 98.1% | 88.9% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 61.0 | 5.96e-01 | 96.3% | 84.7% |
| 1vg5A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 57.0 | 5.15e-01 | 100.0% | 61.6% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.73 | 63.0 | 5.59e-01 | 96.3% | 90.9% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 60.0 | 4.50e-01 | 92.6% | 85.8% |
| 2zc2A00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.72 | 63.0 | 5.67e-01 | 100.0% | 90.7% |
| 4dbgB02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 57.0 | 5.53e-01 | 90.7% | 85.2% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.70 | 54.0 | 4.15e-01 | 87.0% | 36.6% |
| 5x68A00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 57.0 | 3.46e-01 | 92.6% | 91.2% |
| 2bnkA00 | 1.10.8.600 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Phage phi29 replication organiser protein p16.7-like | 0.67 | 52.0 | 5.02e-01 | 90.7% | 78.1% |
| 1e9fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 57.0 | 3.88e-01 | 100.0% | 90.1% |
| 3gdeA01 | 1.10.3260.10 | Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain | 0.66 | 49.0 | 3.30e-01 | 88.9% | 20.1% |
| 2jujA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 49.0 | 4.90e-01 | 94.4% | 87.5% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.60 | 49.0 | 3.28e-01 | 96.3% | 49.6% |
| 5grqA00 | 1.10.8.810 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain | 0.59 | 45.0 | 3.88e-01 | 85.2% | 78.9% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.55 | 43.0 | 4.32e-01 | 90.7% | 92.7% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 42.0 | 3.17e-01 | 87.0% | 40.2% |
| 1d3yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 45.0 | 4.12e-01 | 100.0% | 91.5% |
| 1z1vA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.50 | 39.0 | 3.73e-01 | 96.3% | 75.7% |
ECOD (99)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3621809 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.98 | 92.0 | 8.22e-01 | 98.1% | 78.6% |
| 3619511 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.98 | 93.0 | 8.61e-01 | 100.0% | 84.6% |
| 4927213 | 148.1.3.47 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid | 0.98 | 93.0 | 8.91e-01 | 100.0% | 90.0% |
| 5027108 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.98 | 92.0 | 8.87e-01 | 100.0% | 91.7% |
| 5028605 | 148.1.3.47 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid | 0.97 | 92.0 | 8.87e-01 | 100.0% | 90.0% |
| 3994437 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.97 | 93.0 | 8.58e-01 | 100.0% | 87.7% |
| 3793159 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.97 | 92.0 | 8.54e-01 | 100.0% | 86.2% |
| 4528166 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.97 | 92.0 | 8.54e-01 | 100.0% | 84.6% |
| 4965689 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.97 | 90.0 | 8.63e-01 | 98.1% | 90.0% |
| 4449599 | 148.1.3.47 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid | 0.97 | 91.0 | 8.23e-01 | 100.0% | 80.0% |
| 4444764 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.97 | 91.0 | 8.23e-01 | 100.0% | 78.6% |
| 4934350 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 91.0 | 8.46e-01 | 100.0% | 84.6% |
| 4160285 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 91.0 | 8.77e-01 | 100.0% | 91.7% |
| 5040775 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 91.0 | 8.74e-01 | 100.0% | 91.7% |
| 4948160 | 148.1.3.405 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rep_fac_C | 0.96 | 91.0 | 8.44e-01 | 100.0% | 84.6% |
| 4994187 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.96 | 91.0 | 8.42e-01 | 100.0% | 84.6% |
| 3742104 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.96 | 90.0 | 8.68e-01 | 100.0% | 91.7% |
| 4029750 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 90.0 | 8.40e-01 | 100.0% | 84.6% |
| 4993112 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 91.0 | 6.57e-01 | 100.0% | 42.3% |
| 4980405 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.96 | 90.0 | 8.40e-01 | 100.0% | 84.6% |
| 4576684 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.96 | 91.0 | 8.17e-01 | 100.0% | 78.6% |
| 5082447 | 148.1.3.47 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid | 0.96 | 90.0 | 7.90e-01 | 100.0% | 74.7% |
| 4947827 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.96 | 90.0 | 8.67e-01 | 100.0% | 91.7% |
| 3240928 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.96 | 90.0 | 8.35e-01 | 100.0% | 90.8% |
| 5054243 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 90.0 | 8.33e-01 | 100.0% | 84.6% |
| 4199378 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 90.0 | 8.33e-01 | 100.0% | 84.6% |
| 3606743 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 89.0 | 7.84e-01 | 100.0% | 73.3% |
| 4474463 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 90.0 | 8.08e-01 | 100.0% | 78.6% |
| 5036744 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 89.0 | 8.04e-01 | 100.0% | 78.6% |
| 3503914 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.95 | 89.0 | 8.28e-01 | 100.0% | 84.6% |
| 3932276 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 89.0 | 8.28e-01 | 100.0% | 84.6% |
| 5006918 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 89.0 | 8.55e-01 | 100.0% | 91.7% |
| 3520054 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.95 | 88.0 | 8.24e-01 | 100.0% | 89.2% |
| 4069825 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 89.0 | 8.24e-01 | 100.0% | 84.6% |
| 3865128 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 89.0 | 8.24e-01 | 100.0% | 86.2% |
| 3387061 | 148.1.3.47 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid | 0.95 | 88.0 | 8.21e-01 | 100.0% | 86.2% |
| 5062561 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 88.0 | 8.22e-01 | 100.0% | 84.6% |
| 3724955 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.95 | 89.0 | 8.25e-01 | 100.0% | 84.6% |
| 4966288 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.94 | 88.0 | 8.20e-01 | 100.0% | 84.6% |
| 3191809 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.94 | 88.0 | 6.75e-01 | 100.0% | 92.7% |
| 5003869 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.94 | 88.0 | 8.16e-01 | 100.0% | 87.7% |
| 4078005 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.94 | 88.0 | 8.49e-01 | 100.0% | 91.7% |
| 4889454 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.94 | 83.0 | 7.52e-01 | 94.4% | 82.9% |
| 3269672 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.94 | 87.0 | 8.09e-01 | 100.0% | 84.6% |
| 3519403 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.94 | 87.0 | 8.09e-01 | 100.0% | 84.6% |
| 5020254 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.93 | 87.0 | 8.09e-01 | 100.0% | 87.7% |
| 3720295 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.93 | 87.0 | 6.89e-01 | 100.0% | 94.0% |
| 4462629 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.93 | 88.0 | 8.19e-01 | 100.0% | 84.6% |
| 3885028 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.93 | 82.0 | 6.92e-01 | 94.4% | 61.2% |
| 3388508 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.93 | 86.0 | 8.06e-01 | 100.0% | 84.6% |
| 3823847 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.93 | 86.0 | 7.58e-01 | 100.0% | 73.3% |
| 3688793 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.93 | 86.0 | 6.63e-01 | 100.0% | 59.1% |
| 4017701 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.93 | 85.0 | 7.20e-01 | 100.0% | 85.9% |
| 3785772 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.93 | 86.0 | 7.76e-01 | 100.0% | 81.4% |
| 3653509 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.92 | 85.0 | 7.93e-01 | 100.0% | 84.6% |
| 4939138 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.92 | 82.0 | 8.19e-01 | 94.4% | 92.7% |
| 3728370 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.92 | 85.0 | 7.16e-01 | 100.0% | 85.9% |
| 3297296 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.92 | 80.0 | 7.71e-01 | 92.6% | 100.0% |
| 3247646 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.92 | 85.0 | 7.90e-01 | 100.0% | 84.6% |
| 3738684 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.92 | 84.0 | 8.12e-01 | 100.0% | 91.7% |
| 4932414 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.91 | 81.0 | 7.76e-01 | 98.1% | 85.0% |
| 4512475 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.91 | 81.0 | 7.52e-01 | 94.4% | 78.5% |
| 3267723 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.90 | 83.0 | 7.51e-01 | 100.0% | 80.0% |
| 5024661 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.90 | 82.0 | 5.17e-01 | 100.0% | 22.1% |
| 3611993 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.90 | 82.0 | 7.41e-01 | 98.1% | 92.9% |
| 3184842 | 103.1.1.94 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF26112 | 0.90 | 69.0 | 6.26e-01 | 88.9% | 62.9% |
| 3699805 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.90 | 83.0 | 7.52e-01 | 100.0% | 85.7% |
| 3174002 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 84.0 | 8.37e-01 | 100.0% | 100.0% |
| 3484089 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 81.0 | 7.06e-01 | 100.0% | 81.2% |
| 52232 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 80.0 | 7.17e-01 | 100.0% | 80.0% |
| 3240015 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.89 | 82.0 | 7.67e-01 | 100.0% | 89.2% |
| 3583536 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.89 | 82.0 | 6.65e-01 | 100.0% | 57.9% |
| 3786369 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.88 | 67.0 | 6.75e-01 | 88.9% | 80.0% |
| 5013695 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.88 | 79.0 | 7.07e-01 | 100.0% | 77.3% |
| 4931896 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.88 | 80.0 | 7.51e-01 | 100.0% | 86.2% |
| 3387071 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.88 | 79.0 | 7.60e-01 | 100.0% | 88.3% |
| 4206573 | 148.1.3.39 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HolB_lid | 0.88 | 69.0 | 7.45e-01 | 90.7% | 100.0% |
| 3394574 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.87 | 69.0 | 6.94e-01 | 92.6% | 83.6% |
| 4379243 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 78.0 | 7.37e-01 | 100.0% | 89.2% |
| 3591455 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.87 | 61.0 | 6.61e-01 | 81.5% | 88.9% |
| 4541765 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.87 | 78.0 | 7.36e-01 | 100.0% | 84.6% |
| 3537579 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 79.0 | 7.01e-01 | 100.0% | 89.3% |
| 5079893 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 78.0 | 7.17e-01 | 100.0% | 80.0% |
| 4032558 | 148.1.3.222 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF27254 | 0.87 | 78.0 | 7.35e-01 | 100.0% | 89.2% |
| 3840044 | 2004.1.1.995 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27254 | 0.87 | 78.0 | 7.56e-01 | 100.0% | 91.7% |
| 4204294 | 148.1.3.21 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_4 | 0.87 | 77.0 | 6.94e-01 | 100.0% | 80.0% |
| 4950385 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 77.0 | 7.73e-01 | 96.3% | 94.5% |
| 3987908 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 77.0 | 7.26e-01 | 100.0% | 87.7% |
| 4635810 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.86 | 79.0 | 7.39e-01 | 100.0% | 92.3% |
| 3337773 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.86 | 79.0 | 6.81e-01 | 100.0% | 83.7% |
| 4045986 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.85 | 75.0 | 6.75e-01 | 100.0% | 82.7% |
| 3351184 | 103.1.1.87 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_At5g58720 | 0.83 | 63.0 | 6.78e-01 | 87.0% | 97.8% |
| 4969408 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 73.0 | 5.12e-01 | 100.0% | 33.9% |
| 3600819 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.83 | 66.0 | 6.39e-01 | 100.0% | 78.3% |
| 3684488 | 103.1.1.2 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CUE | 0.80 | 67.0 | 6.95e-01 | 94.4% | 100.0% |
| 3287188 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 72.0 | 6.74e-01 | 100.0% | 90.8% |
| 3638311 | 103.1.1.77 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Rap1_C | 0.73 | 56.0 | 5.34e-01 | 94.4% | 70.8% |
| 3204342 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 54.0 | 5.45e-01 | 88.9% | 85.5% |
| 3362045 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.65 | 47.0 | 4.87e-01 | 81.5% | 88.0% |
D3
high
residues 238-335
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.65 | 41.0 | 3.29e-01 | 72.4% | 33.3% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 50.0 | 4.33e-01 | 91.8% | 55.9% |
| 1xzpA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.55 | 46.0 | 3.91e-01 | 92.9% | 66.3% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.54 | 44.0 | 4.04e-01 | 95.9% | 67.2% |
| 2jexA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.54 | 46.0 | 4.64e-01 | 93.9% | 93.8% |
| 2hz8A00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.53 | 44.0 | 4.20e-01 | 92.9% | 77.4% |
| 1sqgA01 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.53 | 38.0 | 3.43e-01 | 76.5% | 100.0% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.53 | 46.0 | 4.61e-01 | 99.0% | 94.1% |
| 2r6aC01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.53 | 33.0 | 3.42e-01 | 86.7% | 65.6% |
| 5dkoA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.52 | 46.0 | 3.90e-01 | 99.0% | 92.8% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 47.0 | 4.35e-01 | 99.0% | 95.9% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 33.0 | 3.30e-01 | 89.8% | 61.4% |
| 2raeA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 45.0 | 4.11e-01 | 100.0% | 89.8% |
| 2oezA02 | 1.10.3900.10 | Mainly Alpha › Orthogonal Bundle › YacF-like › YacF-like | 0.51 | 46.0 | 3.88e-01 | 99.0% | 93.9% |
| 4ackB00 | 1.25.40.590 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU | 0.51 | 39.0 | 3.41e-01 | 82.7% | 61.4% |
| 1sk7A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.50 | 41.0 | 3.34e-01 | 88.8% | 64.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4278707 | 138.1.1.3 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNApol3-delta_C | 0.77 | 69.0 | 6.50e-01 | 100.0% | 99.2% |
| 4175240 | 138.1.1.3 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNApol3-delta_C | 0.75 | 68.0 | 6.36e-01 | 100.0% | 94.2% |
| 3362792 | 4982.1.1.3 ↗ | alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › Tic110 | 0.60 | 49.0 | 4.05e-01 | 96.9% | 50.0% |
| 3232022 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.54 | 36.0 | 3.36e-01 | 94.9% | 51.1% |
| 3974874 | 4946.1.1.1 ↗ | alpha bundles › helical domain in YacF-like proteins › helical domain in YacF-like proteins › helical domain in YacF-like proteins › ZapD | 0.54 | 48.0 | 3.96e-01 | 100.0% | 86.7% |
| 3279812 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.53 | 44.0 | 3.93e-01 | 93.9% | 82.1% |
| 3249529 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.52 | 45.0 | 4.04e-01 | 95.9% | 85.9% |
| 4993965 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.51 | 45.0 | 3.91e-01 | 95.9% | 74.0% |
| 4125854 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.51 | 42.0 | 3.70e-01 | 94.9% | 66.9% |