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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00207

Bact-Vir

SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00207

Identity

Kingdom:
phage

Quality

59.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 400-474
PDB
D2 high residues 479-549
PDB
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l8qA03 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.88 81.0 6.96e-01 100.0% 68.2%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.87 78.0 7.09e-01 98.6% 76.6%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 51.0 5.33e-01 85.9% 67.7%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 49.0 5.14e-01 81.7% 67.2%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 48.0 4.59e-01 80.3% 52.5%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 53.0 6.00e-01 97.2% 90.7%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.79 58.0 6.40e-01 93.0% 98.2%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 46.0 4.63e-01 80.3% 58.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 46.0 4.92e-01 80.3% 68.3%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 46.0 4.54e-01 81.7% 56.6%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 46.0 5.08e-01 78.9% 76.8%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 47.0 4.89e-01 76.1% 68.2%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 50.0 5.19e-01 73.2% 74.2%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 48.0 5.17e-01 87.3% 78.3%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.68 48.0 3.77e-01 100.0% 35.3%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 4.10e-01 80.3% 85.4%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.66 39.0 4.03e-01 83.1% 62.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 3.76e-01 76.1% 86.5%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 4.69e-01 100.0% 69.8%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 4.73e-01 81.7% 80.6%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.79e-01 80.3% 85.0%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 47.0 3.64e-01 91.5% 37.4%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 3.83e-01 80.3% 55.1%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 50.0 3.75e-01 93.0% 74.7%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.10e-01 87.3% 58.2%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.59 45.0 4.43e-01 81.7% 79.5%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.83e-01 85.9% 59.6%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 49.0 4.14e-01 94.4% 89.2%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 49.0 3.60e-01 100.0% 38.0%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.56 50.0 4.03e-01 100.0% 69.8%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.56 44.0 3.48e-01 87.3% 41.7%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 40.0 3.78e-01 77.5% 78.2%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.38e-01 84.5% 42.5%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 49.0 4.31e-01 100.0% 77.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 48.0 4.44e-01 100.0% 76.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.41e-01 84.5% 45.0%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 38.0 3.81e-01 77.5% 73.7%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.84e-01 91.5% 75.0%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.62e-01 80.3% 71.3%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.55e-01 100.0% 72.7%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.69e-01 91.5% 69.5%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.50 39.0 3.49e-01 85.9% 67.0%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.50 43.0 2.94e-01 98.6% 54.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4529157 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 80.0 7.32e-01 95.8% 76.7%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.46e-01 100.0% 75.8%
4604979 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 81.0 7.05e-01 100.0% 69.2%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 80.0 6.95e-01 98.6% 67.6%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 79.0 7.23e-01 97.2% 78.9%
4146099 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 78.0 7.05e-01 97.2% 73.7%
4281674 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 79.0 6.84e-01 98.6% 67.6%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 77.0 7.06e-01 95.8% 76.7%
4533441 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 80.0 7.19e-01 100.0% 75.8%
4606105 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.87 80.0 7.04e-01 100.0% 75.0%
4601417 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 80.0 7.14e-01 100.0% 76.8%
4165809 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 76.0 7.16e-01 95.8% 81.2%
4051624 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 78.0 6.77e-01 98.6% 68.6%
4449691 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 66.0 6.95e-01 81.7% 90.5%
4346134 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 79.0 6.89e-01 100.0% 70.2%
4270831 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.86 78.0 6.74e-01 98.6% 68.6%
4437729 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.85 79.0 6.93e-01 100.0% 72.0%
3385990 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.85 78.0 6.76e-01 100.0% 70.5%
4125972 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.85 77.0 6.76e-01 98.6% 72.0%
4559046 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.84 77.0 6.69e-01 100.0% 69.5%
4606821 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.84 77.0 6.82e-01 100.0% 72.0%
4174198 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.84 76.0 6.70e-01 98.6% 72.0%
4102935 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.84 76.0 6.65e-01 100.0% 69.5%
4266587 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.83 75.0 6.82e-01 100.0% 75.8%
4524648 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.83 75.0 6.55e-01 100.0% 69.5%
4379676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.83 74.0 6.47e-01 98.6% 68.6%
4943227 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.82 48.0 5.84e-01 73.2% 93.3%
3981659 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 47.0 4.34e-01 71.8% 46.7%
139963 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.80 53.0 6.00e-01 97.2% 90.7%
3278077 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 60.0 6.50e-01 97.2% 93.3%
4964802 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 49.0 5.23e-01 77.5% 75.0%
3944370 101.1.1.318 alpha arrays › HTH › HTH › Three-helical HTH › PF30335 0.78 58.0 5.92e-01 93.0% 80.0%
4952293 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.77 44.0 5.62e-01 73.2% 100.0%
5038587 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.76 45.0 4.89e-01 77.5% 70.0%
1035813 101.1.6.2 alpha arrays › HTH › HTH › TrpR › HTH_7 0.76 46.0 5.22e-01 78.9% 82.7%
2628410 101.1.1.86 alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH 0.75 57.0 5.89e-01 100.0% 86.4%
3736803 101.1.1.57 alpha arrays › HTH › HTH › Three-helical HTH › MRP-L20 0.73 44.0 3.30e-01 70.4% 26.1%
3391053 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 41.0 4.85e-01 71.8% 91.1%
5062184 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.70 43.0 4.68e-01 80.3% 75.0%
5047003 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 43.0 4.37e-01 80.3% 70.0%
5054427 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 55.0 4.44e-01 98.6% 80.7%
3968886 101.1.1.77 alpha arrays › HTH › HTH › Three-helical HTH › HTH_50 0.63 46.0 4.76e-01 83.1% 83.1%
4994271 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.63 55.0 4.82e-01 100.0% 90.9%
5061884 101.1.2.887 alpha arrays › HTH › HTH › winged helix domain › DUF1670 0.62 49.0 3.82e-01 87.3% 38.7%
4034377 4982.1.1.2 alpha arrays › KaiA/RbsU domain-like › KaiA/RbsU domain › KaiA/RbsU domain › RsbU_N 0.61 50.0 4.64e-01 90.1% 82.2%
3972373 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 3.53e-01 93.0% 34.3%
3191120 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.59 50.0 3.73e-01 97.2% 76.4%
4021491 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 51.0 3.86e-01 97.2% 74.4%
4426620 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.59 44.0 4.14e-01 81.7% 76.7%
3253586 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.57 50.0 4.01e-01 100.0% 55.9%
3424337 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.56 47.0 4.57e-01 93.0% 88.7%
5041454 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 43.0 4.22e-01 88.7% 87.5%
5040184 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.47e-01 97.2% 95.0%
3681611 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.54 46.0 3.67e-01 100.0% 52.3%
4028450 627.1.1.1 alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.53 44.0 3.41e-01 97.2% 60.6%
3586944 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.52 38.0 3.57e-01 80.3% 77.8%
3204144 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.51 43.0 3.66e-01 100.0% 63.8%
3893929 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 44.0 3.80e-01 100.0% 76.7%
D3 medium residues 43-122_142-156_331-369
PDB
D4 medium residues 157-270_286-330
PDB