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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00213
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00213
Identity
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-56
D2
medium
residues 90-239
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00407__D33-166
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04664.19 best | OGFr_N | 30.7 | 3.00e-07 | 88.7% | 58.2% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ma5A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 40.0 | 5.04e-01 | 82.7% | 92.2% |
| 6fdpA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 42.0 | 4.64e-01 | 93.3% | 77.5% |
| 2xevB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 45.0 | 4.87e-01 | 93.3% | 82.3% |
| 3vldA01 | 1.25.10.50 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.67 | 55.0 | 4.35e-01 | 100.0% | 43.4% |
| 2jekA00 | 1.25.40.380 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein of unknown function DUF1810 | 0.66 | 54.0 | 5.60e-01 | 100.0% | 94.3% |
| 2r5sA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 34.0 | 4.42e-01 | 81.3% | 89.2% |
| 3sl9B00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.66 | 49.0 | 4.81e-01 | 100.0% | 71.5% |
| 7ldgA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 55.0 | 4.82e-01 | 100.0% | 61.8% |
| 1tjcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 38.0 | 4.69e-01 | 87.3% | 93.7% |
| 3urzA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 42.0 | 3.86e-01 | 100.0% | 50.0% |
| 3sz7A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 41.0 | 4.14e-01 | 93.3% | 64.9% |
| 3n71A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 48.0 | 4.27e-01 | 94.0% | 56.3% |
| 3gt5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 53.0 | 3.93e-01 | 100.0% | 44.5% |
| 8d0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 53.0 | 3.91e-01 | 100.0% | 40.2% |
| 4xhcA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.58 | 52.0 | 4.06e-01 | 98.7% | 53.7% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.58 | 52.0 | 4.03e-01 | 100.0% | 48.7% |
| 3kezA01 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 46.0 | 4.01e-01 | 86.0% | 63.4% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.57 | 47.0 | 4.30e-01 | 97.3% | 67.2% |
| 7e9uA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.57 | 53.0 | 3.71e-01 | 100.0% | 37.6% |
| 5gj7A01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.57 | 36.0 | 3.87e-01 | 70.0% | 74.4% |
| 1h54A02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.55 | 50.0 | 3.77e-01 | 99.3% | 62.1% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3270473 | 4240.1.1.2 ↗ | alpha arrays › Rv1873-like › Rv1873-like › Rv1873-like › OGFr_N | 0.92 | 88.0 | 7.77e-01 | 100.0% | 84.4% |
| 3855839 | 109.4.1.745 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › OGFr_N | 0.91 | 88.0 | 7.60e-01 | 100.0% | 79.1% |
| 3889637 | 109.3.1.353 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › OGFr_N | 0.91 | 88.0 | 7.23e-01 | 100.0% | 69.4% |
| 3913221 | 4240.1.1.2 ↗ | alpha arrays › Rv1873-like › Rv1873-like › Rv1873-like › OGFr_N | 0.91 | 88.0 | 7.31e-01 | 100.0% | 72.3% |
| 3751061 | 4240.1.1.2 ↗ | alpha arrays › Rv1873-like › Rv1873-like › Rv1873-like › OGFr_N | 0.91 | 88.0 | 7.37e-01 | 100.0% | 73.9% |
| 4022256 | 109.7.1.14 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › PF28749 | 0.78 | 39.0 | 5.28e-01 | 74.7% | 91.3% |
| 3761553 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.69 | 59.0 | 4.78e-01 | 100.0% | 49.3% |
| 4525886 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.68 | 55.0 | 3.57e-01 | 94.7% | 20.5% |
| 3726128 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 41.0 | 5.05e-01 | 80.7% | 97.9% |
| 3432794 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 48.0 | 5.19e-01 | 97.3% | 91.1% |
| 3734918 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.63 | 54.0 | 5.26e-01 | 100.0% | 85.5% |
| 3549053 | 109.4.1.435 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RICTOR_N | 0.61 | 52.0 | 4.80e-01 | 93.3% | 78.5% |
| 3186135 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 44.0 | 4.24e-01 | 93.3% | 65.7% |
| 3288283 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.59 | 46.0 | 4.52e-01 | 94.0% | 74.5% |
| 3727071 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 53.0 | 3.83e-01 | 100.0% | 52.5% |
| 59813 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 4.60e-01 | 100.0% | 68.5% |
| 3646940 | 109.4.1.1191 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN_C | 0.56 | 49.0 | 4.32e-01 | 94.7% | 81.8% |
| 3724505 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 4.49e-01 | 94.0% | 76.7% |
| 3262951 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 44.0 | 4.29e-01 | 100.0% | 77.0% |
| 4668645 | 109.4.1.295 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt | 0.54 | 44.0 | 4.08e-01 | 93.3% | 69.7% |
| 3474104 | 109.4.1.557 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TTC7_N | 0.54 | 48.0 | 4.61e-01 | 97.3% | 94.1% |
| 4016849 | 633.4.1.7 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › TMD0_ABC | 0.51 | 38.0 | 3.48e-01 | 76.0% | 71.8% |
| 3510214 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.50 | 42.0 | 3.88e-01 | 91.3% | 69.0% |