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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00227
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00227
Identity
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-48_199-243
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ppyA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.62 | 43.0 | 3.24e-01 | 71.6% | 100.0% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.61 | 47.0 | 4.19e-01 | 85.2% | 81.5% |
| 7qu9A01 | 3.60.120.10 | Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase | 0.56 | 44.0 | 2.72e-01 | 82.7% | 61.7% |
| 1rwzA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.55 | 42.0 | 3.05e-01 | 82.7% | 95.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 41.0 | 3.36e-01 | 81.5% | 52.8% |
| 5f7uA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.55 | 43.0 | 3.21e-01 | 87.7% | 96.5% |
| 2y8nB02 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 29.0 | 3.54e-01 | 71.6% | 90.9% |
| 2joiA00 | 3.30.310.190 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.55 | 37.0 | 3.57e-01 | 71.6% | 77.1% |
| 4ifaA01 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.54 | 47.0 | 3.24e-01 | 96.3% | 31.5% |
| 3g12B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 35.0 | 3.15e-01 | 74.1% | 46.9% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 41.0 | 2.89e-01 | 86.4% | 100.0% |
| 2xvlA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 42.0 | 3.07e-01 | 86.4% | 94.9% |
| 2f2hA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.53 | 41.0 | 3.02e-01 | 87.7% | 90.6% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.52 | 36.0 | 3.49e-01 | 71.6% | 86.8% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.52 | 38.0 | 2.58e-01 | 76.5% | 72.3% |
| 2z1cB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 39.0 | 4.08e-01 | 92.6% | 89.2% |
| 4esnA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.50 | 39.0 | 3.98e-01 | 85.2% | 91.0% |
| 5zx8A00 | 3.40.50.1470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase | 0.50 | 42.0 | 3.21e-01 | 91.4% | 85.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001118 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.58 | 42.0 | 3.36e-01 | 76.5% | 93.3% |
| 4031368 | 3264.1.1.0 ↗ | 0.57 | 40.0 | 3.39e-01 | 74.1% | 54.5% | |
| 4980224 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.56 | 35.0 | 3.04e-01 | 74.1% | 40.0% |
| 4247937 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 35.0 | 3.12e-01 | 91.4% | 48.2% |
| 4315725 | 295.1.1.12 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0231 | 0.55 | 33.0 | 2.86e-01 | 95.1% | 40.0% |
| 3618540 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 34.0 | 3.55e-01 | 75.3% | 72.0% |
| 3933585 | 2486.1.1.1 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ECH_1 | 0.52 | 45.0 | 3.23e-01 | 100.0% | 80.4% |
| None | — | 0.52 | 44.0 | 2.64e-01 | 96.3% | 70.7% | |
| 5028109 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.51 | 36.0 | 3.70e-01 | 72.8% | 100.0% |
| 3451427 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.51 | 35.0 | 3.61e-01 | 72.8% | 93.8% |
| 4954769 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.50 | 37.0 | 3.07e-01 | 80.2% | 90.3% |
D2
high
residues 52-96_138-187
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.66 | 42.0 | 3.55e-01 | 93.7% | 40.4% |
| 3cz8A02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.64 | 39.0 | 4.68e-01 | 98.9% | 100.0% |
| 1zswA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.64 | 41.0 | 3.48e-01 | 93.7% | 40.7% |
| 7oiyA01 | 3.90.70.130 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 48.0 | 3.65e-01 | 81.1% | 86.6% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.60 | 33.0 | 3.73e-01 | 97.9% | 70.4% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.59 | 37.0 | 3.80e-01 | 90.5% | 64.9% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 30.0 | 3.62e-01 | 95.8% | 76.2% |
| 4hc5D00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.57 | 44.0 | 3.98e-01 | 83.2% | 91.6% |
| 1nbwA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 41.0 | 3.65e-01 | 74.7% | 92.4% |
| 2i7rA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 44.0 | 4.13e-01 | 83.2% | 97.4% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.55 | 46.0 | 3.39e-01 | 91.6% | 61.3% |
| 2p25A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 44.0 | 4.08e-01 | 85.3% | 100.0% |
| 1v5vA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.55 | 35.0 | 3.61e-01 | 100.0% | 67.4% |
| 3e8tA00 | 3.15.10.30 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain | 0.54 | 42.0 | 3.21e-01 | 82.1% | 97.7% |
| 2qqzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 42.0 | 3.98e-01 | 85.3% | 95.7% |
| 3g12B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 39.0 | 3.72e-01 | 78.9% | 80.5% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.52 | 41.0 | 3.38e-01 | 100.0% | 45.8% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 40.0 | 4.08e-01 | 81.1% | 96.7% |
| 2pulB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 28.0 | 2.84e-01 | 84.2% | 50.0% |
| 3n8hA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.52 | 38.0 | 4.15e-01 | 82.1% | 100.0% |
| 1yj7B01 | 3.30.70.1530 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 | 0.52 | 31.0 | 3.59e-01 | 96.8% | 81.7% |
| 1olzA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 45.0 | 2.91e-01 | 100.0% | 92.2% |
| 3bwxA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 41.0 | 3.07e-01 | 93.7% | 84.2% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.51 | 40.0 | 3.93e-01 | 100.0% | 77.9% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 43.0 | 3.12e-01 | 98.9% | 87.5% |
| 4obiA00 | 2.60.320.10 | Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain | 0.50 | 39.0 | 4.10e-01 | 100.0% | 92.0% |
| 2grgA01 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.50 | 35.0 | 3.71e-01 | 100.0% | 81.9% |
| 3hnrA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 41.0 | 3.27e-01 | 89.5% | 90.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970370 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.70 | 41.0 | 5.08e-01 | 92.6% | 100.0% |
| 4952930 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.69 | 33.0 | 3.50e-01 | 100.0% | 50.6% |
| 5037188 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.69 | 37.0 | 4.18e-01 | 87.4% | 68.0% |
| 3708854 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.67 | 32.0 | 4.24e-01 | 100.0% | 86.0% |
| 4588388 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.65 | 37.0 | 4.44e-01 | 94.7% | 88.3% |
| 3700743 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.63 | 32.0 | 3.72e-01 | 100.0% | 68.6% |
| 5073193 | 220.5.1.1 ↗ | beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N | 0.58 | 44.0 | 4.05e-01 | 100.0% | 62.5% |
| 3697550 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.58 | 36.0 | 3.84e-01 | 100.0% | 72.5% |
| 3672678 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.58 | 29.0 | 3.09e-01 | 100.0% | 51.8% |
| 3972041 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.58 | 45.0 | 3.81e-01 | 84.2% | 96.2% |
| 4943079 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 42.0 | 3.59e-01 | 100.0% | 47.7% |
| 3587781 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 40.0 | 3.47e-01 | 100.0% | 50.4% |
| 3239830 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 49.0 | 3.52e-01 | 94.7% | 44.6% |
| 3531579 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.56 | 39.0 | 3.33e-01 | 100.0% | 44.5% |
| 3171728 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.54 | 47.0 | 4.06e-01 | 100.0% | 62.1% |
| None | — | 0.54 | 44.0 | 2.58e-01 | 91.6% | 56.5% | |
| 5038672 | 243.3.1.78 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF7351 | 0.54 | 37.0 | 3.98e-01 | 78.9% | 85.0% |
| 3600994 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 40.0 | 2.65e-01 | 82.1% | 81.0% |
| 3750640 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.53 | 42.0 | 3.99e-01 | 100.0% | 73.6% |
| 3506182 | 5.1.5.85 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_RFWD3 | 0.52 | 40.0 | 2.80e-01 | 84.2% | 73.6% |
| 3244701 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 45.0 | 3.59e-01 | 91.6% | 58.3% |
| 3714496 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 41.0 | 3.30e-01 | 100.0% | 43.5% |
| 4011458 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 48.0 | 3.93e-01 | 100.0% | 59.4% |
| 3172478 | 708.1.1.30 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › PF30069, PF30070 | 0.52 | 37.0 | 3.17e-01 | 98.9% | 44.2% |
| 1260456 | 283.1.1.3 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase | 0.51 | 39.0 | 4.08e-01 | 100.0% | 96.3% |
| 5020279 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.50 | 39.0 | 3.47e-01 | 95.8% | 57.1% |