←Back to structures
SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00312
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00312
Identity
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-101
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4do8A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.66 | 33.0 | 3.85e-01 | 75.8% | 68.2% |
| 2avxA00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.58 | 40.0 | 3.32e-01 | 70.5% | 80.1% |
| 4bwiB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 40.0 | 3.25e-01 | 73.7% | 89.2% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 38.0 | 2.65e-01 | 71.6% | 94.8% |
| 2bbhA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.54 | 42.0 | 3.68e-01 | 85.3% | 92.7% |
| 4jx0A01 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.52 | 37.0 | 3.18e-01 | 74.7% | 91.8% |
| 2mj0A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.51 | 32.0 | 3.67e-01 | 92.6% | 90.9% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.50 | 36.0 | 3.64e-01 | 100.0% | 76.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929943 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 46.0 | 4.71e-01 | 76.8% | 87.8% |
| 3500644 | 221.6.1.1 ↗ | a+b two layers › beta-Grasp › MM3350-like › MM3350-like › PRiA4_ORF3 | 0.62 | 43.0 | 3.59e-01 | 73.7% | 61.1% |
| 3859192 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 40.0 | 4.16e-01 | 80.0% | 72.2% |
| 3218243 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 47.0 | 4.94e-01 | 96.8% | 100.0% |
| 3637444 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.56 | 45.0 | 3.48e-01 | 94.7% | 84.3% |
| 4945424 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 38.0 | 3.49e-01 | 72.6% | 80.8% |
| 3624908 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 38.0 | 3.87e-01 | 72.6% | 96.7% |
| 3924467 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 41.0 | 4.18e-01 | 94.7% | 88.9% |
| 1481665 | 382.1.1.7 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_cobra-type | 0.51 | 32.0 | 3.67e-01 | 92.6% | 90.9% |