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SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00342
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00342
Identity
- Kingdom:
- phage
Quality
82.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-82
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 53.0 | 5.76e-01 | 100.0% | 79.0% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.77 | 58.0 | 6.17e-01 | 100.0% | 92.2% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.77 | 55.0 | 4.67e-01 | 100.0% | 47.1% |
| 3vygD00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 61.0 | 5.13e-01 | 100.0% | 71.4% |
| 4fm4B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 61.0 | 5.44e-01 | 100.0% | 81.2% |
| 1v29B02 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 60.0 | 5.47e-01 | 100.0% | 83.5% |
| 4gxbA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 47.0 | 4.32e-01 | 93.3% | 89.4% |
| 6p3qA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 51.0 | 4.03e-01 | 100.0% | 69.6% |
| 2k4nA00 | 3.30.720.70 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 42.0 | 3.80e-01 | 80.0% | 77.5% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 45.0 | 4.32e-01 | 97.3% | 74.7% |
| 2fa1A00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.56 | 47.0 | 3.80e-01 | 98.7% | 91.8% |
| 1dlcA03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.54 | 44.0 | 3.41e-01 | 96.0% | 80.2% |
| 4ak1A02 | 2.30.30.1270 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.74e-01 | 70.7% | 89.1% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.65e-01 | 97.3% | 72.5% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.75e-01 | 89.3% | 73.8% |
| 1atnD00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.50 | 41.0 | 2.89e-01 | 92.0% | 63.6% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052256 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 60.0 | 5.48e-01 | 100.0% | 61.1% |
| 3487453 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.76 | 55.0 | 4.56e-01 | 100.0% | 45.6% |
| 2553270 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.75 | 55.0 | 5.60e-01 | 100.0% | 78.1% |
| 3175156 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.75 | 58.0 | 6.04e-01 | 100.0% | 88.6% |
| 3230400 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 57.0 | 6.10e-01 | 100.0% | 93.8% |
| 3915553 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.73 | 56.0 | 4.75e-01 | 100.0% | 50.8% |
| 3495649 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 61.0 | 5.87e-01 | 100.0% | 92.9% |
| 3650296 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.66 | 54.0 | 4.96e-01 | 100.0% | 68.4% |
| 3358748 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.66 | 54.0 | 5.30e-01 | 100.0% | 81.2% |
| 4508544 | 4.1.1.27 ↗ | beta barrels › SH3 › SH3 › SH3 › NHase_beta_C | 0.65 | 60.0 | 5.33e-01 | 100.0% | 79.0% |
| 4486213 | 557.1.1.0 ↗ | alpha arrays › LigA-like domain › LigA-like domain › LigA-like domain | 0.65 | 60.0 | 3.92e-01 | 100.0% | 30.9% |
| 3613831 | 2003.1.3.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO | 0.64 | 48.0 | 3.18e-01 | 81.3% | 55.1% |
| 3514098 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.64 | 45.0 | 3.93e-01 | 74.7% | 89.6% |
| 3365658 | 3324.1.1.1 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › MTR4_beta-barrel | 0.61 | 56.0 | 3.85e-01 | 100.0% | 38.8% |
| 3255737 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.61 | 56.0 | 4.72e-01 | 100.0% | 66.7% |
| 3520070 | 2.1.1.41 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_N_C | 0.57 | 43.0 | 3.80e-01 | 82.7% | 75.7% |
| 2141160 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 42.0 | 3.81e-01 | 78.7% | 83.2% |
| 3541127 | 2.1.1.170 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 | 0.54 | 40.0 | 4.03e-01 | 78.7% | 80.0% |
| 3214812 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.53 | 45.0 | 4.23e-01 | 94.7% | 88.3% |
| 3497234 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 49.0 | 3.73e-01 | 100.0% | 47.9% |
| 3357649 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.53 | 40.0 | 3.18e-01 | 84.0% | 55.8% |
| 3676791 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 40.0 | 4.09e-01 | 90.7% | 86.7% |
| 5002178 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.51 | 30.0 | 3.42e-01 | 70.7% | 88.0% |