←Back to structures
SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00370
Bact-VirSR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00370
Identity
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-83
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qdmA03 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.71 | 53.0 | 5.50e-01 | 84.0% | 84.4% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.59 | 44.0 | 3.76e-01 | 81.5% | 49.3% |
| 6mgiA03 | 1.20.1440.90 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Phosphoenolpyruvate/pyruvate domain | 0.56 | 38.0 | 3.20e-01 | 71.6% | 67.9% |
| 4akgA16 | 1.10.8.720 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Region D6 of dynein motor | 0.51 | 40.0 | 3.21e-01 | 84.0% | 94.5% |
| 2i6hA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 38.0 | 3.64e-01 | 87.7% | 67.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610933 | 150.1.1.96 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PEX11 | 0.56 | 38.0 | 2.77e-01 | 71.6% | 53.9% |
| 3578231 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.55 | 38.0 | 3.90e-01 | 77.8% | 77.3% |
| 3832940 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.53 | 38.0 | 3.11e-01 | 77.8% | 62.4% |
| 3924382 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.52 | 40.0 | 3.73e-01 | 84.0% | 87.6% |