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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00021
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00021
Identity
- Kingdom:
- phage
Quality
67.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-91
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2as0A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.74 | 46.0 | 3.37e-01 | 98.8% | 23.9% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 49.0 | 3.87e-01 | 100.0% | 37.4% |
| 4jneA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.64 | 38.0 | 3.81e-01 | 73.5% | 55.7% |
| 3p9dG01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.64 | 57.0 | 4.06e-01 | 100.0% | 64.0% |
| 2id3A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 37.0 | 4.48e-01 | 94.0% | 95.9% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.63 | 54.0 | 4.98e-01 | 100.0% | 100.0% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 38.0 | 4.13e-01 | 96.4% | 75.4% |
| 1nw9B00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 47.0 | 3.42e-01 | 98.8% | 28.2% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 50.0 | 4.40e-01 | 90.4% | 78.4% |
| 2rklF00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 29.0 | 3.70e-01 | 88.0% | 76.9% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.60 | 51.0 | 4.45e-01 | 100.0% | 62.1% |
| 3kttB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.58 | 51.0 | 3.64e-01 | 100.0% | 63.1% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 4.26e-01 | 94.0% | 79.3% |
| 2zxeA02 | 1.20.1110.10 | Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain | 0.57 | 50.0 | 3.19e-01 | 100.0% | 19.7% |
| 1bm9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.56e-01 | 100.0% | 50.8% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.80e-01 | 100.0% | 98.7% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 44.0 | 4.26e-01 | 100.0% | 77.4% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 4.18e-01 | 100.0% | 85.7% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 4.29e-01 | 96.4% | 100.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.03e-01 | 100.0% | 76.7% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 4.14e-01 | 94.0% | 98.4% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.01e-01 | 100.0% | 80.5% |
| 1r7lA00 | 3.30.2120.10 | Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like | 0.53 | 42.0 | 3.96e-01 | 86.7% | 90.3% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.69e-01 | 96.4% | 67.7% |
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 36.0 | 4.05e-01 | 92.8% | 96.7% |
| 1qhbA00 | 1.10.606.10 | Mainly Alpha › Orthogonal Bundle › Vanadium-containing Chloroperoxidase; domain 2 › Vanadium-containing Chloroperoxidase, domain 2 | 0.53 | 45.0 | 2.78e-01 | 98.8% | 53.1% |
| 2oqgB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.58e-01 | 100.0% | 60.2% |
| 2wpvE00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 44.0 | 3.12e-01 | 95.2% | 36.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 37.0 | 3.79e-01 | 89.2% | 76.5% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 4.13e-01 | 98.8% | 81.3% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 38.0 | 2.92e-01 | 100.0% | 29.8% |
| 4c0dC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.52 | 40.0 | 3.32e-01 | 80.7% | 47.9% |
| 2vxzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 4.07e-01 | 98.8% | 97.0% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 4.32e-01 | 100.0% | 98.7% |
| 1mukA02 | 3.90.1850.10 | Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 | 0.51 | 43.0 | 2.65e-01 | 97.6% | 15.1% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 4.04e-01 | 97.6% | 86.9% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.70e-01 | 97.6% | 76.2% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 4.05e-01 | 100.0% | 100.0% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4929483 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 47.0 | 4.19e-01 | 91.6% | 50.8% |
| 5022727 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.64 | 44.0 | 3.57e-01 | 96.4% | 39.3% |
| 4028116 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.60 | 38.0 | 3.85e-01 | 100.0% | 62.4% |
| 3773922 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.60 | 40.0 | 3.37e-01 | 100.0% | 38.0% |
| 4952681 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 4.86e-01 | 95.2% | 88.7% |
| 4954912 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.60 | 50.0 | 4.00e-01 | 95.2% | 50.9% |
| 3794506 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.59 | 46.0 | 3.39e-01 | 100.0% | 33.2% |
| 3554191 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.59 | 52.0 | 3.55e-01 | 100.0% | 30.0% |
| 3270814 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.58 | 43.0 | 4.42e-01 | 97.6% | 81.2% |
| 5068328 | 141.1.1.1 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt | 0.58 | 42.0 | 2.82e-01 | 77.1% | 28.8% |
| 3806737 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.58 | 47.0 | 4.00e-01 | 89.2% | 92.1% |
| 5031078 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.58 | 38.0 | 3.65e-01 | 100.0% | 56.0% |
| 5081465 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.58 | 42.0 | 3.99e-01 | 100.0% | 64.0% |
| 3922669 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 49.0 | 4.62e-01 | 100.0% | 76.2% |
| 4958413 | 873.1.1.20 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › DUF6125 | 0.58 | 49.0 | 3.96e-01 | 95.2% | 56.4% |
| 5050552 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.57 | 41.0 | 4.07e-01 | 100.0% | 71.1% |
| 3926383 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.57 | 49.0 | 4.06e-01 | 96.4% | 62.2% |
| 4997360 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 3.40e-01 | 100.0% | 33.0% |
| 4008670 | 101.1.2.783 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30336 | 0.56 | 44.0 | 4.72e-01 | 94.0% | 100.0% |
| 4927412 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 4.38e-01 | 100.0% | 82.4% |
| 5028765 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.56 | 42.0 | 3.55e-01 | 81.9% | 93.3% |
| 3571824 | 101.1.2.601 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP, LZ3wCH | 0.56 | 38.0 | 2.85e-01 | 100.0% | 27.0% |
| 3170419 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.56 | 35.0 | 2.90e-01 | 96.4% | 34.0% |
| 5076820 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 42.0 | 4.46e-01 | 100.0% | 94.3% |
| 4948120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 4.25e-01 | 98.8% | 77.8% |
| 4527970 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.55 | 48.0 | 3.70e-01 | 100.0% | 41.5% |
| 3512683 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 4.40e-01 | 96.4% | 100.0% |
| 4177935 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.55 | 38.0 | 3.49e-01 | 86.7% | 53.0% |
| 4958724 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.55 | 37.0 | 3.53e-01 | 100.0% | 56.2% |
| 3962316 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 45.0 | 4.06e-01 | 94.0% | 69.2% |
| 3899864 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 4.42e-01 | 100.0% | 79.0% |
| 5012120 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 49.0 | 4.28e-01 | 100.0% | 67.5% |
| 4942972 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 4.52e-01 | 100.0% | 93.8% |
| 1552160 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.54 | 47.0 | 3.64e-01 | 100.0% | 47.2% |
| 3742536 | 101.1.2.82 ↗ | alpha arrays › HTH › HTH › winged helix domain › TBPIP | 0.54 | 40.0 | 3.42e-01 | 97.6% | 47.1% |
| 3541292 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 46.0 | 4.31e-01 | 100.0% | 77.1% |
| 3788690 | 101.1.2.57 ↗ | alpha arrays › HTH › HTH › winged helix domain › EAP30 | 0.54 | 47.0 | 4.13e-01 | 100.0% | 77.7% |
| 5027134 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.54 | 48.0 | 4.22e-01 | 100.0% | 67.2% |
| 4323155 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 45.0 | 4.22e-01 | 90.4% | 87.0% |
| 3759757 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.54 | 37.0 | 3.50e-01 | 100.0% | 58.1% |
| 4625844 | 101.1.2.20 ↗ | alpha arrays › HTH › HTH › winged helix domain › Arg_repressor | 0.54 | 39.0 | 4.16e-01 | 97.6% | 92.9% |
| 5049424 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 3.55e-01 | 96.4% | 49.7% |
| 4948475 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.53 | 47.0 | 4.02e-01 | 100.0% | 68.1% |
| 4964968 | 192.2.1.88 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › NFACT_N | 0.53 | 40.0 | 3.29e-01 | 91.6% | 42.5% |
| 223867 | 101.1.2.223 ↗ | alpha arrays › HTH › HTH › winged helix domain › DIP2311-like_C | 0.53 | 38.0 | 4.10e-01 | 96.4% | 96.9% |
| 5064092 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 40.0 | 3.63e-01 | 98.8% | 60.0% |
| 5028122 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 35.0 | 3.04e-01 | 97.6% | 42.3% |
| 3885988 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.52 | 42.0 | 3.22e-01 | 85.5% | 80.0% |
| 3209881 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.52 | 37.0 | 2.27e-01 | 75.9% | 15.4% |
| 5024565 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 40.0 | 3.44e-01 | 98.8% | 52.6% |
| 5063941 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.51 | 43.0 | 3.17e-01 | 95.2% | 56.2% |
| None | — | 0.51 | 42.0 | 2.59e-01 | 97.6% | 13.6% | |
| 4994340 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 39.0 | 3.33e-01 | 100.0% | 50.0% |
| 3394692 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.99e-01 | 100.0% | 78.1% |