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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00023
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00023
Identity
- Kingdom:
- phage
Quality
82.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-96
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20242.4 best | Emfourin | 57.8 | 1.60e-15 | 90.4% | 98.9% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oo0A00 | 3.30.1560.10 | Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi | 0.80 | 74.0 | 6.31e-01 | 100.0% | 91.0% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 32.0 | 3.95e-01 | 89.4% | 77.6% |
| 2qrdB01 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 27.0 | 3.79e-01 | 78.7% | 91.9% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.63 | 24.0 | 3.19e-01 | 79.8% | 58.8% |
| 1vl4A01 | 3.30.2290.10 | Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily | 0.62 | 48.0 | 3.68e-01 | 80.9% | 79.5% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 26.0 | 3.57e-01 | 78.7% | 89.5% |
| 6i0iA00 | 3.30.350.10 | Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like | 0.61 | 52.0 | 4.97e-01 | 93.6% | 96.3% |
| 4hwxA00 | 3.30.350.10 | Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like | 0.60 | 53.0 | 5.01e-01 | 96.8% | 93.9% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.59 | 32.0 | 3.51e-01 | 90.4% | 63.3% |
| 2dixA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 28.0 | 3.10e-01 | 88.3% | 53.8% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.56 | 44.0 | 4.23e-01 | 89.4% | 72.5% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.55 | 39.0 | 3.44e-01 | 78.7% | 51.5% |
| 4kh9B02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.55 | 38.0 | 3.54e-01 | 78.7% | 59.3% |
| 1na8B00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.53 | 40.0 | 3.40e-01 | 80.9% | 50.3% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.50 | 33.0 | 3.08e-01 | 92.6% | 52.9% |
| 2xotA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.33e-01 | 79.8% | 69.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4926778 | 861.1.1.3 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › DUF6438 | 0.81 | 75.0 | 6.79e-01 | 100.0% | 94.3% |
| 3470076 | 861.1.1.0 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein | 0.79 | 73.0 | 6.28e-01 | 100.0% | 93.6% |
| 3293481 | 861.1.1.1 ↗ | a+b two layers › Mago nashi protein › Mago nashi protein › Mago nashi protein › Mago_nashi | 0.76 | 66.0 | 5.99e-01 | 94.7% | 100.0% |
| 3670595 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 32.0 | 3.28e-01 | 89.4% | 46.3% |
| 4040973 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.67 | 33.0 | 3.86e-01 | 90.4% | 65.7% |
| 3792117 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 38.0 | 4.36e-01 | 100.0% | 78.8% |
| 4359254 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.65 | 32.0 | 3.55e-01 | 89.4% | 58.7% |
| 3435911 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 31.0 | 3.00e-01 | 89.4% | 39.1% |
| 3606814 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.64 | 34.0 | 3.74e-01 | 95.7% | 61.5% |
| 4631730 | 841.1.1.1 ↗ | a+b two layers › Subtilisin inhibitor › Subtilisin inhibitor › Subtilisin inhibitor › SSI | 0.63 | 56.0 | 5.49e-01 | 97.9% | 99.0% |
| 3436093 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 31.0 | 3.47e-01 | 89.4% | 60.0% |
| 3618566 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 33.0 | 3.16e-01 | 88.3% | 44.5% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 32.0 | 3.41e-01 | 89.4% | 55.3% |
| 4976982 | 330.6.1.0 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain | 0.61 | 31.0 | 3.00e-01 | 88.3% | 42.7% |
| 3590792 | 11.1.1.372 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › WxLIP_HBD | 0.61 | 42.0 | 3.78e-01 | 78.7% | 53.6% |
| 4395737 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 36.0 | 3.77e-01 | 79.8% | 65.9% |
| 3964724 | 3675.1.1.1 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert | 0.56 | 41.0 | 3.42e-01 | 75.5% | 81.3% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 33.0 | 3.61e-01 | 98.9% | 73.3% |
| 3497120 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 30.0 | 2.99e-01 | 89.4% | 51.6% |
| 3837990 | 3675.1.1.0 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain | 0.53 | 38.0 | 3.45e-01 | 75.5% | 82.3% |
| 3217379 | 896.1.1.2 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 | 0.53 | 33.0 | 3.34e-01 | 92.6% | 62.1% |
| 5028431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 4.14e-01 | 78.7% | 90.0% |
| 4018201 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 36.0 | 2.98e-01 | 71.3% | 72.4% |
| 3797447 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.52 | 33.0 | 3.34e-01 | 92.6% | 63.2% |
| 3255285 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.50 | 36.0 | 3.34e-01 | 74.5% | 100.0% |