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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00035
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00035
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-90
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2510002_prodigal-single.1__X__X__00307__D2-76
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 37.0 | 4.13e-01 | 96.6% | 84.6% |
| 2f5kA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 32.0 | 3.91e-01 | 82.0% | 92.0% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 47.0 | 4.15e-01 | 96.6% | 96.4% |
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 4.03e-01 | 100.0% | 81.6% |
| 2fpnA02 | 3.30.360.40 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like | 0.55 | 33.0 | 3.73e-01 | 91.0% | 81.5% |
| 4kc3A00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.52 | 45.0 | 3.92e-01 | 97.8% | 96.4% |
| 4owkE00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 44.0 | 3.94e-01 | 100.0% | 96.3% |
| 4qqgG00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 34.0 | 3.68e-01 | 92.1% | 83.3% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.51 | 42.0 | 3.98e-01 | 98.9% | 76.4% |
| 4qrlA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 41.0 | 3.84e-01 | 94.4% | 71.8% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4484893 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 33.0 | 3.77e-01 | 78.7% | 75.4% |
| 5059922 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 46.0 | 4.59e-01 | 100.0% | 83.2% |
| 1839931 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.57 | 48.0 | 4.21e-01 | 96.6% | 95.1% |
| 4168024 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.56 | 48.0 | 4.19e-01 | 96.6% | 96.4% |
| 3166548 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.55 | 48.0 | 4.38e-01 | 100.0% | 81.6% |
| 5022848 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 31.0 | 3.53e-01 | 76.4% | 78.3% |
| 3472609 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.54 | 48.0 | 3.97e-01 | 100.0% | 60.0% |
| 3461753 | 9.2.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N | 0.54 | 46.0 | 3.76e-01 | 100.0% | 88.6% |
| 3392305 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 47.0 | 4.41e-01 | 98.9% | 88.2% |
| 3237402 | 5084.4.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Outer membrane phospholipase A (OMPLA) › Outer membrane phospholipase A (OMPLA) › DUF7042 | 0.53 | 46.0 | 4.00e-01 | 100.0% | 81.4% |
| 3588210 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.53 | 43.0 | 4.23e-01 | 92.1% | 100.0% |
| 3207518 | 220.1.1.92 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH | 0.53 | 48.0 | 4.09e-01 | 100.0% | 73.6% |
| 3511505 | 9.23.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 | 0.52 | 44.0 | 4.04e-01 | 96.6% | 100.0% |
| 5032559 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 44.0 | 4.48e-01 | 95.5% | 96.7% |
| 4961804 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.79e-01 | 94.4% | 88.0% |
| 3254881 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 37.0 | 3.91e-01 | 92.1% | 92.0% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.50 | 37.0 | 3.87e-01 | 77.5% | 90.0% |
| 5012485 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.50 | 35.0 | 3.72e-01 | 86.5% | 86.7% |