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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00092
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00092
Identity
- Kingdom:
- phage
Quality
76.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-90
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.69 | 47.0 | 3.47e-01 | 70.7% | 70.1% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.69 | 49.0 | 4.74e-01 | 73.2% | 82.2% |
| 1sqhA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 49.0 | 4.24e-01 | 76.8% | 77.9% |
| 2wpwC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 53.0 | 3.47e-01 | 82.9% | 76.0% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.65 | 47.0 | 4.28e-01 | 74.4% | 77.4% |
| 4pswA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 56.0 | 4.74e-01 | 92.7% | 82.7% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.65 | 50.0 | 4.03e-01 | 82.9% | 87.5% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.65 | 45.0 | 3.53e-01 | 72.0% | 84.4% |
| 3al9A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.64 | 49.0 | 3.11e-01 | 84.1% | 47.2% |
| 4ua3A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 54.0 | 4.09e-01 | 92.7% | 67.2% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.63 | 46.0 | 4.56e-01 | 79.3% | 93.3% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 54.0 | 4.08e-01 | 92.7% | 98.4% |
| 1i12D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 54.0 | 4.30e-01 | 93.9% | 79.6% |
| 2fckA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.61 | 51.0 | 3.95e-01 | 90.2% | 69.9% |
| 2knqA01 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.61 | 47.0 | 3.98e-01 | 81.7% | 90.2% |
| 3bk5A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 48.0 | 3.50e-01 | 86.6% | 68.5% |
| 3it8D01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.61 | 42.0 | 3.30e-01 | 72.0% | 80.0% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.61 | 47.0 | 3.47e-01 | 86.6% | 67.5% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 50.0 | 4.00e-01 | 92.7% | 80.2% |
| 2rgqB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 45.0 | 3.89e-01 | 82.9% | 87.2% |
| 3h5kA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.58 | 49.0 | 3.75e-01 | 90.2% | 61.6% |
| 3i8bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 40.0 | 2.81e-01 | 72.0% | 67.3% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 43.0 | 2.93e-01 | 81.7% | 29.4% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 3.41e-01 | 72.0% | 63.9% |
| 1nw1A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 41.0 | 3.93e-01 | 75.6% | 94.8% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.57 | 47.0 | 3.61e-01 | 89.0% | 86.1% |
| 3ctkA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.56 | 46.0 | 3.63e-01 | 89.0% | 61.1% |
| 4za3A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.55 | 45.0 | 3.51e-01 | 86.6% | 60.7% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 46.0 | 3.75e-01 | 93.9% | 87.7% |
| 3apaA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.55 | 38.0 | 3.24e-01 | 72.0% | 53.6% |
| 4gakA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 46.0 | 3.28e-01 | 92.7% | 71.6% |
| 3zh8C01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 37.0 | 3.43e-01 | 72.0% | 81.7% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 40.0 | 3.97e-01 | 78.0% | 94.3% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.54 | 48.0 | 3.92e-01 | 98.8% | 66.9% |
| 5tgnA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.51e-01 | 74.4% | 96.3% |
| 2qqpA03 | 2.60.40.4260 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.90e-01 | 98.8% | 86.9% |
| 6ygnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 36.0 | 3.40e-01 | 70.7% | 71.3% |
| 1nioA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 44.0 | 3.47e-01 | 87.8% | 61.1% |
| 5ywwA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.15e-01 | 81.7% | 89.3% |
| 5tz6B02 | 3.10.129.120 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.53 | 40.0 | 3.24e-01 | 80.5% | 90.9% |
| 3s27B01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 39.0 | 3.40e-01 | 80.5% | 65.4% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 4.09e-01 | 74.4% | 98.4% |
| 2f4wB00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.52 | 42.0 | 3.48e-01 | 89.0% | 58.6% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.52 | 40.0 | 3.59e-01 | 82.9% | 70.4% |
| 3bdrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.38e-01 | 87.8% | 96.8% |
| 3s6pA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.51 | 43.0 | 3.70e-01 | 100.0% | 85.9% |
| 4rbnA01 | 3.10.450.330 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.33e-01 | 80.5% | 63.6% |
| 2zf8A01 | 2.60.40.2540 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.51e-01 | 95.1% | 86.4% |
| 3o6uC00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.51 | 43.0 | 3.91e-01 | 100.0% | 89.9% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 4.00e-01 | 92.7% | 84.3% |
| 1golA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 40.0 | 3.56e-01 | 91.5% | 75.8% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.50 | 43.0 | 3.59e-01 | 96.3% | 78.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3800712 | 213.1.1.37 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_18 | 0.76 | 53.0 | 4.04e-01 | 72.0% | 54.3% |
| 3218637 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.75 | 56.0 | 4.14e-01 | 78.0% | 54.5% |
| 3515274 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.71 | 56.0 | 4.28e-01 | 85.4% | 75.1% |
| 1492277 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.70 | 54.0 | 4.08e-01 | 82.9% | 69.4% |
| 4355722 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 49.0 | 4.64e-01 | 73.2% | 95.8% |
| 2755883 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.69 | 49.0 | 4.75e-01 | 74.4% | 80.4% |
| 4946507 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 50.0 | 5.20e-01 | 76.8% | 97.3% |
| 3628642 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.68 | 51.0 | 3.31e-01 | 80.5% | 35.9% |
| 3462291 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.67 | 51.0 | 3.44e-01 | 80.5% | 24.3% |
| 4991489 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.67 | 48.0 | 5.11e-01 | 75.6% | 95.7% |
| 4263663 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.66 | 52.0 | 4.20e-01 | 85.4% | 90.0% |
| 4018808 | 719.1.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain | 0.66 | 46.0 | 4.01e-01 | 72.0% | 95.8% |
| 3300781 | 5.1.4.226 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 | 0.65 | 47.0 | 3.28e-01 | 74.4% | 32.4% |
| 3222359 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.64 | 49.0 | 4.53e-01 | 84.1% | 89.9% |
| 4170432 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.64 | 58.0 | 5.01e-01 | 100.0% | 87.2% |
| 4988847 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 46.0 | 4.81e-01 | 79.3% | 96.0% |
| 5069904 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.62 | 55.0 | 4.51e-01 | 95.1% | 67.1% |
| None | — | 0.61 | 47.0 | 3.15e-01 | 81.7% | 27.0% | |
| 4877157 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.61 | 49.0 | 3.27e-01 | 86.6% | 27.8% |
| 3628540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 46.0 | 4.71e-01 | 95.1% | 85.0% |
| 3273903 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.60 | 52.0 | 3.38e-01 | 93.9% | 57.4% |
| 4981443 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.60 | 44.0 | 2.84e-01 | 81.7% | 16.2% |
| 3056895 | 71.1.1.7 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_2 | 0.59 | 45.0 | 3.42e-01 | 80.5% | 76.3% |
| 3845956 | 316.1.1.20 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C | 0.58 | 42.0 | 3.37e-01 | 76.8% | 84.7% |
| 3433204 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.58 | 44.0 | 3.23e-01 | 82.9% | 67.5% |
| 3742908 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.58 | 51.0 | 4.91e-01 | 97.6% | 86.3% |
| 3992026 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.58 | 41.0 | 4.52e-01 | 84.1% | 95.4% |
| 3789082 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.57 | 51.0 | 3.27e-01 | 100.0% | 57.9% |
| 3227515 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 44.0 | 3.84e-01 | 85.4% | 98.4% |
| 3384535 | 708.1.1.25 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › SWIM | 0.56 | 47.0 | 4.33e-01 | 91.5% | 89.5% |
| 3540014 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.56 | 41.0 | 3.59e-01 | 79.3% | 78.5% |
| 4890815 | 292.1.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Ribosome inactivating proteins (RIP) › Ribosome inactivating proteins (RIP) › RIP | 0.56 | 46.0 | 3.21e-01 | 89.0% | 39.5% |
| None | — | 0.56 | 48.0 | 3.17e-01 | 100.0% | 96.4% | |
| 3937047 | 9.1.1.55 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7045 | 0.55 | 46.0 | 4.08e-01 | 91.5% | 73.3% |
| 3900936 | 247.1.1.5 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C | 0.55 | 41.0 | 2.89e-01 | 80.5% | 59.4% |
| 4059727 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.55 | 45.0 | 3.64e-01 | 91.5% | 95.2% |
| 3398841 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.54 | 41.0 | 4.40e-01 | 85.4% | 97.1% |
| 3062889 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 43.0 | 3.44e-01 | 89.0% | 96.0% |
| 388243 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.54 | 41.0 | 2.67e-01 | 81.7% | 26.5% |
| 5035736 | 71.1.1.26 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 | 0.54 | 47.0 | 3.71e-01 | 97.6% | 74.1% |
| 3828471 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.53 | 43.0 | 3.74e-01 | 90.2% | 93.3% |
| 4672378 | 71.1.1.1 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin | 0.51 | 42.0 | 3.28e-01 | 91.5% | 62.2% |
| 4133228 | 71.1.1.2 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA | 0.50 | 42.0 | 3.28e-01 | 92.7% | 57.3% |