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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00105
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00105
Identity
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-81
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i8bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.75 | 49.0 | 2.97e-01 | 84.8% | 11.0% |
| 3qdkB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.75 | 47.0 | 2.87e-01 | 80.4% | 10.7% |
| 8eg0B01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.74 | 44.0 | 2.59e-01 | 82.6% | 7.7% |
| 3vgzC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.73 | 44.0 | 2.65e-01 | 82.6% | 8.7% |
| 4j0wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.72 | 43.0 | 2.58e-01 | 82.6% | 8.3% |
| 4nsxA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.72 | 44.0 | 2.66e-01 | 87.0% | 9.2% |
| 6m90A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.72 | 43.0 | 2.60e-01 | 82.6% | 9.2% |
| 2ynoA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.71 | 43.0 | 2.61e-01 | 84.8% | 9.2% |
| 4aezA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.71 | 45.0 | 2.70e-01 | 84.8% | 9.2% |
| 1u2kA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.70 | 43.0 | 3.15e-01 | 80.4% | 21.9% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 42.0 | 3.06e-01 | 82.6% | 21.8% |
| 3odtA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.70 | 42.0 | 2.53e-01 | 82.6% | 9.1% |
| 3fvzA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.69 | 43.0 | 2.60e-01 | 84.8% | 8.8% |
| 4zovB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.69 | 43.0 | 2.52e-01 | 87.0% | 7.8% |
| 2fbeA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.68 | 45.0 | 2.99e-01 | 91.3% | 17.0% |
| 7apkF01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.68 | 41.0 | 2.44e-01 | 82.6% | 8.2% |
| 7qryB01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.67 | 44.0 | 3.10e-01 | 100.0% | 20.9% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 40.0 | 2.95e-01 | 82.6% | 21.3% |
| 6fcvB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.65 | 40.0 | 2.38e-01 | 82.6% | 7.7% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 43.0 | 3.97e-01 | 84.8% | 50.8% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.64 | 45.0 | 2.85e-01 | 82.6% | 14.7% |
| 3k1lA02 | 3.30.457.30 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.62 | 39.0 | 3.20e-01 | 80.4% | 32.2% |
| 7qs4A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.62 | 40.0 | 2.74e-01 | 84.8% | 17.3% |
| 3le2A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.60 | 48.0 | 3.43e-01 | 87.0% | 58.8% |
| 4nwyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 43.0 | 3.23e-01 | 80.4% | 58.6% |
| 2dlxA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 3.40e-01 | 82.6% | 69.0% |
| 2f51A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 45.0 | 3.42e-01 | 82.6% | 66.7% |
| 4wj7D00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 42.0 | 3.21e-01 | 80.4% | 52.0% |
| 4cc9A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 44.0 | 2.67e-01 | 84.8% | 85.7% |
| 4uv3E01 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.57 | 43.0 | 2.79e-01 | 80.4% | 27.1% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.56 | 45.0 | 3.67e-01 | 97.8% | 61.0% |
| 1w97L01 | 3.30.420.380 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.56 | 37.0 | 2.59e-01 | 80.4% | 20.8% |
| 1hkfA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.27e-01 | 84.8% | 71.3% |
| 1gxrA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 45.0 | 2.70e-01 | 100.0% | 81.8% |
| 4dohB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.11e-01 | 100.0% | 44.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3670270 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.71 | 45.0 | 2.79e-01 | 80.4% | 10.9% |
| 3349740 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 52.0 | 5.25e-01 | 100.0% | 82.2% |
| 3846830 | 10.1.1.8 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY | 0.68 | 44.0 | 2.92e-01 | 87.0% | 16.4% |
| 3747151 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.67 | 42.0 | 2.81e-01 | 84.8% | 15.7% |
| 3379168 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.67 | 41.0 | 3.71e-01 | 80.4% | 42.9% |
| 2898191 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.67 | 43.0 | 2.86e-01 | 87.0% | 16.6% |
| None | — | 0.66 | 50.0 | 2.81e-01 | 82.6% | 20.6% | |
| 3740833 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.66 | 42.0 | 2.54e-01 | 84.8% | 8.8% |
| 3359029 | 5.1.4.259 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz | 0.65 | 42.0 | 2.60e-01 | 84.8% | 11.1% |
| 4002773 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.63 | 42.0 | 2.45e-01 | 82.6% | 7.7% |
| 3518821 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 47.0 | 3.03e-01 | 93.5% | 16.2% |
| 3221977 | 5.1.5.75 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 | 0.62 | 42.0 | 2.50e-01 | 82.6% | 8.2% |
| 3486749 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.62 | 46.0 | 3.38e-01 | 82.6% | 60.8% |
| 3605676 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.62 | 43.0 | 2.59e-01 | 82.6% | 9.2% |
| 3856444 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.61 | 40.0 | 2.68e-01 | 89.1% | 15.2% |
| 5062944 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 48.0 | 4.93e-01 | 93.5% | 100.0% |
| 3191607 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.60 | 46.0 | 2.70e-01 | 93.5% | 20.9% |
| 5038921 | 3156.1.1.8 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase_2 | 0.59 | 46.0 | 3.15e-01 | 89.1% | 88.1% |
| 5004736 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 39.0 | 3.64e-01 | 97.8% | 53.4% |
| 3610331 | 330.13.1.0 ↗ | a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor | 0.58 | 53.0 | 4.44e-01 | 100.0% | 93.3% |
| 3973605 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 41.0 | 3.66e-01 | 84.8% | 51.5% |
| 4879756 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.58 | 44.0 | 3.04e-01 | 84.8% | 41.1% |
| 5056414 | 11.18.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in metallo-endopeptidase BACOVA_00663 › N-terminal domain in metallo-endopeptidase BACOVA_00663 | 0.58 | 42.0 | 3.09e-01 | 80.4% | 58.5% |
| 3390587 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 47.0 | 4.44e-01 | 100.0% | 88.3% |
| 3214987 | 375.1.1.89 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LITAF-like | 0.55 | 47.0 | 4.09e-01 | 100.0% | 82.7% |
| 3653804 | 706.2.1.0 ↗ | beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G | 0.55 | 40.0 | 3.60e-01 | 82.6% | 67.1% |
| 3849240 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.55 | 43.0 | 2.90e-01 | 89.1% | 47.2% |
| 3205743 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.54 | 42.0 | 3.36e-01 | 100.0% | 42.5% |
| 4010715 | 243.3.1.17 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Imm-NTF2-2 | 0.54 | 37.0 | 3.38e-01 | 76.1% | 95.7% |
| 3947081 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 36.0 | 3.30e-01 | 87.0% | 46.9% |
| 3703395 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.53 | 41.0 | 2.81e-01 | 84.8% | 85.5% |
| 4023431 | 5.1.4.513 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40, WD40_CDC20-Fz | 0.52 | 44.0 | 2.55e-01 | 95.7% | 69.3% |
| 4200873 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 39.0 | 2.31e-01 | 89.1% | 53.5% |