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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00127

Bact-Vir

SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00127

Identity

Kingdom:
phage

Quality

62.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 72-128
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hd9A00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.56 42.0 3.17e-01 82.5% 73.8%
2eabB03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 44.0 3.55e-01 93.0% 97.5%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.84e-01 100.0% 60.2%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.73e-01 100.0% 56.9%
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.58e-01 100.0% 60.8%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.61e-01 94.7% 94.1%
5w8oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.64e-01 94.7% 94.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3884353 101.1.2.381 ↗ alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing 0.54 49.0 3.88e-01 100.0% 85.2%
2067746 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.53 43.0 2.71e-01 94.7% 95.1%
4523893 2002.1.1.297 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF30387 0.51 38.0 2.44e-01 87.7% 28.9%