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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00139
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00139
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-67
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19698.6 best | DUF6197 | 27.6 | 4.10e-06 | 97.0% | 44.1% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkwB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.60 | 50.0 | 3.63e-01 | 94.0% | 83.9% |
| 2wadB03 | 1.10.10.1230 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain | 0.58 | 43.0 | 3.91e-01 | 79.1% | 97.8% |
| 3oeeY02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.50 | 37.0 | 2.99e-01 | 80.6% | 89.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3690386 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.54 | 44.0 | 2.92e-01 | 91.0% | 75.2% |
| 4671383 | 4177.1.1.9 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom | 0.53 | 43.0 | 2.94e-01 | 89.6% | 88.6% |
| 3599612 | 7060.1.1.1 ↗ | alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 | 0.52 | 45.0 | 3.31e-01 | 98.5% | 85.1% |
| 3598732 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 39.0 | 3.37e-01 | 80.6% | 61.5% |
| 3478366 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 38.0 | 3.34e-01 | 91.0% | 52.4% |
D2
medium
residues 68-148
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.68 | 33.0 | 2.96e-01 | 80.2% | 34.8% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.68 | 36.0 | 3.56e-01 | 81.5% | 49.4% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 43.0 | 4.60e-01 | 80.2% | 86.6% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.59 | 35.0 | 3.91e-01 | 81.5% | 75.8% |
| 1floA01 | 3.30.300.80 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) | 0.58 | 38.0 | 3.52e-01 | 92.6% | 51.4% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.58 | 37.0 | 3.63e-01 | 90.1% | 60.2% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 49.0 | 4.06e-01 | 96.3% | 75.2% |
| 3kuqA00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.56 | 48.0 | 3.72e-01 | 97.5% | 78.1% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 41.0 | 3.71e-01 | 80.2% | 77.1% |
| 2qsaA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.54 | 42.0 | 3.95e-01 | 86.4% | 87.1% |
| 6srbA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 32.0 | 2.93e-01 | 74.1% | 45.0% |
| 3byiD00 | 1.10.555.10 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein | 0.53 | 46.0 | 3.47e-01 | 98.8% | 74.6% |
| 3mfnB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 41.0 | 3.53e-01 | 96.3% | 53.2% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 41.0 | 3.65e-01 | 85.2% | 82.1% |
| 4crwA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 42.0 | 3.17e-01 | 96.3% | 54.9% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 39.0 | 3.52e-01 | 82.7% | 80.2% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 37.0 | 3.43e-01 | 88.9% | 59.5% |
| 4a64A01 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.50 | 38.0 | 3.23e-01 | 80.2% | 62.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4565836 | 4146.1.1.1 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › YqgQ-like | 0.64 | 37.0 | 4.00e-01 | 82.7% | 67.1% |
| 4955748 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.62 | 34.0 | 3.30e-01 | 79.0% | 47.8% |
| 4027684 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 37.0 | 2.71e-01 | 74.1% | 48.6% |
| 1144608 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.53 | 42.0 | 3.75e-01 | 85.2% | 80.7% |
| 3372955 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.53 | 41.0 | 3.69e-01 | 88.9% | 59.2% |
| 3321849 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.52 | 40.0 | 3.85e-01 | 95.1% | 71.1% |
| 4523817 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.52 | 39.0 | 3.05e-01 | 81.5% | 87.7% |
| 4828003 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.51 | 40.0 | 3.55e-01 | 85.2% | 79.3% |
| 2625677 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.51 | 39.0 | 3.52e-01 | 82.7% | 80.2% |
| 3503440 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.50 | 36.0 | 3.34e-01 | 88.9% | 55.7% |