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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00166
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00166
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 18-44_65-154
D2
medium
residues 155-217
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lmcA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.83 | 65.0 | 4.53e-01 | 84.1% | 36.6% |
| 5czdB00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.61 | 41.0 | 3.84e-01 | 77.8% | 57.1% |
| 2dbgA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 39.0 | 3.37e-01 | 95.2% | 43.7% |
| 2uvaG06 | 1.20.930.70 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.57 | 45.0 | 3.67e-01 | 87.3% | 46.2% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 40.0 | 3.93e-01 | 81.0% | 85.9% |
| 7x4eA01 | 1.10.1220.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › DNA sulphur modification protein DndE | 0.53 | 47.0 | 3.96e-01 | 100.0% | 62.6% |
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 39.0 | 3.84e-01 | 84.1% | 85.1% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 41.0 | 4.04e-01 | 95.2% | 89.9% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4215373 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.86 | 71.0 | 5.21e-01 | 88.9% | 41.3% |
| 5043168 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.82 | 69.0 | 4.94e-01 | 90.5% | 38.8% |
| 5051784 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.80 | 67.0 | 4.63e-01 | 92.1% | 36.5% |
| 5026585 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.79 | 67.0 | 4.63e-01 | 92.1% | 42.6% |
| 3686935 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.55 | 44.0 | 3.83e-01 | 88.9% | 62.0% |
| 3994413 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 38.0 | 3.00e-01 | 76.2% | 55.0% |