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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00220
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00220
Identity
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-89
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 34.6 | 2.60e-08 | 100.0% | 88.5% |
D2
high
residues 337-378
Domain cluster:
representative
CATH (91)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 62.0 | 5.54e-01 | 78.6% | 62.1% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 61.0 | 5.55e-01 | 78.6% | 62.5% |
| 1znnA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.83 | 70.0 | 4.29e-01 | 95.2% | 30.6% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.82 | 60.0 | 6.09e-01 | 81.0% | 92.7% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 60.0 | 5.29e-01 | 81.0% | 60.3% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 59.0 | 4.86e-01 | 78.6% | 48.0% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 59.0 | 5.31e-01 | 78.6% | 58.6% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 60.0 | 5.19e-01 | 81.0% | 57.1% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 65.0 | 5.51e-01 | 88.1% | 69.2% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 57.0 | 4.50e-01 | 78.6% | 41.4% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 58.0 | 5.07e-01 | 81.0% | 58.7% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 58.0 | 4.84e-01 | 81.0% | 50.0% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.77 | 57.0 | 4.01e-01 | 81.0% | 28.2% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 64.0 | 6.26e-01 | 97.6% | 86.7% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.76 | 60.0 | 5.53e-01 | 88.1% | 78.6% |
| 4o5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 61.0 | 5.11e-01 | 88.1% | 60.6% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 56.0 | 5.82e-01 | 81.0% | 92.3% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 55.0 | 4.91e-01 | 81.0% | 60.0% |
| 1ulyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 57.0 | 4.40e-01 | 83.3% | 41.6% |
| 6az1a00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 58.0 | 4.93e-01 | 90.5% | 55.6% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 54.0 | 4.24e-01 | 81.0% | 39.3% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 59.0 | 5.44e-01 | 100.0% | 69.1% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 56.0 | 4.57e-01 | 100.0% | 45.0% |
| 1u2wD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 54.0 | 4.18e-01 | 81.0% | 41.5% |
| 2a6cA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.73 | 53.0 | 4.38e-01 | 78.6% | 46.1% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 58.0 | 4.46e-01 | 100.0% | 39.8% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 54.0 | 4.31e-01 | 81.0% | 45.1% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 53.0 | 5.10e-01 | 83.3% | 72.0% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.72 | 52.0 | 4.54e-01 | 78.6% | 59.4% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 57.0 | 5.33e-01 | 100.0% | 70.4% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.04e-01 | 88.1% | 63.9% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 61.0 | 5.64e-01 | 100.0% | 80.0% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 5.39e-01 | 100.0% | 76.0% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 57.0 | 4.98e-01 | 92.9% | 66.7% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.71 | 59.0 | 5.07e-01 | 95.2% | 67.6% |
| 4d7kA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 53.0 | 4.03e-01 | 81.0% | 38.5% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 53.0 | 4.12e-01 | 83.3% | 40.4% |
| 2xkoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 55.0 | 4.27e-01 | 88.1% | 56.4% |
| 4xviA01 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.70 | 52.0 | 3.65e-01 | 83.3% | 26.4% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 60.0 | 5.75e-01 | 100.0% | 85.4% |
| 1j5yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 61.0 | 5.31e-01 | 100.0% | 67.2% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.70 | 53.0 | 3.78e-01 | 100.0% | 26.2% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 57.0 | 5.23e-01 | 100.0% | 71.4% |
| 4kibA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 3.81e-01 | 78.6% | 39.4% |
| 5cz2G00 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.68 | 51.0 | 5.14e-01 | 85.7% | 87.8% |
| 2cobA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 5.26e-01 | 90.5% | 86.4% |
| 2r3sB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 54.0 | 4.37e-01 | 88.1% | 45.7% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 58.0 | 5.03e-01 | 100.0% | 63.5% |
| 4kmfA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 57.0 | 5.05e-01 | 100.0% | 64.5% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 53.0 | 4.51e-01 | 88.1% | 57.7% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 51.0 | 4.08e-01 | 83.3% | 43.7% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 3.74e-01 | 100.0% | 28.5% |
| 1k6yA01 | 1.10.10.200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain | 0.67 | 50.0 | 4.98e-01 | 88.1% | 84.8% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 4.06e-01 | 100.0% | 39.8% |
| 2k9lA00 | 1.10.10.1330 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain | 0.67 | 57.0 | 4.73e-01 | 97.6% | 57.9% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.90e-01 | 100.0% | 63.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.92e-01 | 100.0% | 62.7% |
| 3lstA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.12e-01 | 88.1% | 43.0% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 3.65e-01 | 100.0% | 27.0% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 57.0 | 3.88e-01 | 100.0% | 33.3% |
| 1x1aA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 3.38e-01 | 88.1% | 20.9% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 4.43e-01 | 100.0% | 50.6% |
| 3lsgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 46.0 | 4.29e-01 | 78.6% | 85.5% |
| 7cluA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 4.03e-01 | 88.1% | 41.6% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 50.0 | 4.66e-01 | 97.6% | 72.1% |
| 3nrvB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 57.0 | 3.99e-01 | 100.0% | 34.1% |
| 3k69A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 53.0 | 3.64e-01 | 95.2% | 28.7% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 3.79e-01 | 100.0% | 35.9% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 54.0 | 3.75e-01 | 100.0% | 33.8% |
| 2jt1A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 55.0 | 4.64e-01 | 100.0% | 63.4% |
| 2hr3D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 53.0 | 4.73e-01 | 100.0% | 66.1% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 51.0 | 4.02e-01 | 100.0% | 84.5% |
| 2y75A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 53.0 | 3.86e-01 | 100.0% | 36.0% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 55.0 | 3.95e-01 | 100.0% | 41.7% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 49.0 | 3.85e-01 | 100.0% | 39.0% |
| 2k9sA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 49.0 | 3.84e-01 | 97.6% | 51.4% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 54.0 | 3.73e-01 | 100.0% | 34.5% |
| 2l02A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.21e-01 | 97.6% | 50.0% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 3.68e-01 | 100.0% | 34.1% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 3.60e-01 | 100.0% | 30.7% |
| 2xubA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 4.34e-01 | 100.0% | 53.8% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 51.0 | 3.73e-01 | 100.0% | 42.7% |
| 3gwzA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 3.98e-01 | 97.6% | 46.1% |
| 4x0qA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.59 | 50.0 | 3.53e-01 | 100.0% | 34.7% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 3.53e-01 | 100.0% | 35.0% |
| 3mklA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 45.0 | 3.65e-01 | 100.0% | 87.5% |
| 4fx0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 50.0 | 3.62e-01 | 100.0% | 35.2% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 3.43e-01 | 100.0% | 32.8% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 47.0 | 3.33e-01 | 100.0% | 32.5% |
| 2rasA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 41.0 | 2.76e-01 | 92.9% | 38.2% |
| 3mc1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 39.0 | 3.60e-01 | 100.0% | 76.1% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3947063 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.98 | 77.0 | 7.21e-01 | 83.3% | 70.0% |
| 5070906 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.97 | 81.0 | 7.00e-01 | 88.1% | 68.3% |
| 3589184 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.87 | 66.0 | 5.45e-01 | 83.3% | 50.7% |
| 4201722 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.85 | 67.0 | 6.86e-01 | 88.1% | 100.0% |
| 3589359 | 101.1.1.68 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 | 0.84 | 67.0 | 6.89e-01 | 88.1% | 97.5% |
| 5056682 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 68.0 | 5.70e-01 | 90.5% | 57.1% |
| 4165809 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.82 | 67.0 | 5.27e-01 | 90.5% | 51.8% |
| 4574919 | 2002.1.1.71 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SOR_SNZ | 0.82 | 70.0 | 4.15e-01 | 95.2% | 26.3% |
| 4014100 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 66.0 | 5.88e-01 | 90.5% | 68.3% |
| 4604979 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.81 | 65.0 | 4.87e-01 | 90.5% | 42.3% |
| 4627768 | 101.1.2.786 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_1 | 0.80 | 60.0 | 6.14e-01 | 83.3% | 97.5% |
| 3989075 | 101.1.3.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 | 0.80 | 62.0 | 6.41e-01 | 100.0% | 94.7% |
| 5053981 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 59.0 | 5.08e-01 | 83.3% | 52.3% |
| 3565285 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.78 | 62.0 | 5.49e-01 | 92.9% | 64.6% |
| 4996898 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 58.0 | 5.04e-01 | 81.0% | 56.2% |
| 3942922 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.78 | 65.0 | 5.33e-01 | 97.6% | 52.0% |
| 4963527 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.77 | 58.0 | 4.41e-01 | 81.0% | 41.1% |
| 5027752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 64.0 | 5.20e-01 | 95.2% | 53.8% |
| 4486944 | 7565.1.1.0 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like | 0.76 | 65.0 | 4.21e-01 | 97.6% | 22.2% |
| 4962330 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 62.0 | 4.89e-01 | 100.0% | 44.7% |
| 4458965 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.75 | 60.0 | 4.85e-01 | 88.1% | 48.8% |
| 4031116 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 63.0 | 5.60e-01 | 95.2% | 66.7% |
| 4939711 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 58.0 | 4.39e-01 | 83.3% | 38.9% |
| 4258153 | 101.1.1.43 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Mor | 0.75 | 66.0 | 6.03e-01 | 97.6% | 74.5% |
| 4998155 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 53.0 | 5.12e-01 | 78.6% | 72.0% |
| 4009872 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.75 | 59.0 | 5.26e-01 | 88.1% | 65.0% |
| 5075437 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.75 | 61.0 | 5.14e-01 | 100.0% | 54.3% |
| 3303282 | 101.1.1.267 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26138 | 0.75 | 63.0 | 4.88e-01 | 100.0% | 43.9% |
| 3452698 | 101.1.10.37 ↗ | alpha arrays › HTH › HTH › Cyclin-like › PF26138 | 0.74 | 63.0 | 4.92e-01 | 100.0% | 45.3% |
| 4932316 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.74 | 65.0 | 4.89e-01 | 100.0% | 52.0% |
| 5051680 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.74 | 63.0 | 5.14e-01 | 100.0% | 51.2% |
| 4197050 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.74 | 65.0 | 4.85e-01 | 100.0% | 41.0% |
| 5017324 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.74 | 57.0 | 4.18e-01 | 83.3% | 33.9% |
| 5040558 | 101.1.2.162 ↗ | alpha arrays › HTH › HTH › winged helix domain › DprA_WH | 0.74 | 60.0 | 4.93e-01 | 88.1% | 49.3% |
| 5022508 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.74 | 54.0 | 4.20e-01 | 81.0% | 38.9% |
| 4968185 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 56.0 | 4.66e-01 | 83.3% | 52.1% |
| 3967591 | 101.1.2.162 ↗ | alpha arrays › HTH › HTH › winged helix domain › DprA_WH | 0.73 | 54.0 | 4.64e-01 | 78.6% | 53.8% |
| 3989048 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.73 | 62.0 | 4.21e-01 | 95.2% | 36.7% |
| 5020024 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.73 | 56.0 | 4.07e-01 | 83.3% | 33.6% |
| 5009931 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 56.0 | 4.56e-01 | 100.0% | 45.0% |
| 4945289 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 62.0 | 5.57e-01 | 100.0% | 71.7% |
| 4948953 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.72 | 57.0 | 4.90e-01 | 100.0% | 55.4% |
| 5016733 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.72 | 57.0 | 4.21e-01 | 100.0% | 33.6% |
| 3890615 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.72 | 57.0 | 5.44e-01 | 90.5% | 78.0% |
| 5003296 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.72 | 56.0 | 4.18e-01 | 100.0% | 33.6% |
| 4944661 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 59.0 | 5.52e-01 | 100.0% | 80.0% |
| 3651753 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.71 | 59.0 | 3.56e-01 | 100.0% | 71.2% |
| 4099721 | 101.1.3.24 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF27685 | 0.70 | 62.0 | 4.70e-01 | 100.0% | 42.0% |
| 4198219 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 56.0 | 5.50e-01 | 90.5% | 86.7% |
| 3955613 | 138.1.1.9 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C | 0.70 | 58.0 | 4.16e-01 | 100.0% | 32.0% |
| 3455559 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 59.0 | 4.67e-01 | 100.0% | 56.8% |
| 3908710 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 61.0 | 4.74e-01 | 100.0% | 52.6% |
| 3976687 | 101.1.2.162 ↗ | alpha arrays › HTH › HTH › winged helix domain › DprA_WH | 0.70 | 51.0 | 4.32e-01 | 78.6% | 48.6% |
| 4965642 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.70 | 56.0 | 3.77e-01 | 95.2% | 23.1% |
| 5004617 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.70 | 57.0 | 3.91e-01 | 100.0% | 26.2% |
| 5018001 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.70 | 57.0 | 3.97e-01 | 100.0% | 28.4% |
| 3477766 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 56.0 | 4.51e-01 | 92.9% | 74.1% |
| 4926977 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.69 | 55.0 | 4.06e-01 | 100.0% | 33.6% |
| 4919061 | 101.1.1.14 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_Zn | 0.69 | 53.0 | 5.33e-01 | 90.5% | 88.6% |
| 3880943 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 57.0 | 4.54e-01 | 100.0% | 55.8% |
| 4929718 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 51.0 | 3.89e-01 | 83.3% | 35.2% |
| 3907370 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.69 | 59.0 | 3.58e-01 | 100.0% | 19.3% |
| 5039088 | 101.1.2.110 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_IclR | 0.68 | 57.0 | 3.96e-01 | 97.6% | 29.7% |
| 3800176 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 55.0 | 4.53e-01 | 100.0% | 51.8% |
| 5033276 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.67 | 52.0 | 3.59e-01 | 100.0% | 24.5% |
| 4626289 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.67 | 52.0 | 4.67e-01 | 92.9% | 72.3% |
| 5040795 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.67 | 56.0 | 4.62e-01 | 100.0% | 53.3% |
| 3483301 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.66 | 57.0 | 3.92e-01 | 100.0% | 32.7% |
| 4967777 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.66 | 58.0 | 4.59e-01 | 100.0% | 57.6% |
| None | — | 0.66 | 56.0 | 3.34e-01 | 100.0% | 12.5% | |
| 5011732 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.66 | 56.0 | 3.34e-01 | 100.0% | 12.5% |
| 3886097 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 54.0 | 4.62e-01 | 100.0% | 84.0% |
| 3367533 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.66 | 59.0 | 3.71e-01 | 100.0% | 52.0% |
| 4963911 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.65 | 51.0 | 3.90e-01 | 97.6% | 35.2% |
| 5047368 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.65 | 51.0 | 3.97e-01 | 100.0% | 73.9% |
| 4966151 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.65 | 54.0 | 4.57e-01 | 100.0% | 54.7% |
| 4348165 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.64 | 46.0 | 4.11e-01 | 81.0% | 63.1% |
| 3793383 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.63 | 51.0 | 4.59e-01 | 100.0% | 72.3% |
| 3984815 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.63 | 48.0 | 4.55e-01 | 92.9% | 83.6% |
| 4931071 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.63 | 55.0 | 3.78e-01 | 100.0% | 29.0% |
| 3960825 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.63 | 55.0 | 3.75e-01 | 100.0% | 32.7% |
| 3287587 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.62 | 53.0 | 3.73e-01 | 100.0% | 32.9% |
| 5046445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 44.0 | 4.06e-01 | 78.6% | 56.7% |
| 5075195 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 50.0 | 3.71e-01 | 100.0% | 33.9% |
| 4142269 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.60 | 45.0 | 4.34e-01 | 92.9% | 94.5% |
| 4165105 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.60 | 46.0 | 3.76e-01 | 88.1% | 44.7% |
| 3517520 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.57 | 47.0 | 4.30e-01 | 100.0% | 70.0% |
| 4094272 | 101.1.1.2 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC | 0.56 | 46.0 | 4.33e-01 | 100.0% | 76.4% |
| 3288983 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 41.0 | 3.92e-01 | 100.0% | 85.0% |
| 3810689 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.53 | 41.0 | 2.46e-01 | 100.0% | 66.0% |
D3
medium
residues 109-175
D4
medium
residues 185-218
Domain cluster:
representative
CATH (73)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.92 | 81.0 | 5.15e-01 | 100.0% | 23.3% |
| 5douA01 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.89 | 76.0 | 4.81e-01 | 100.0% | 20.5% |
| 1ku3A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 75.0 | 6.23e-01 | 100.0% | 65.6% |
| 4lhfA00 | 6.10.200.10 | Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox | 0.85 | 60.0 | 4.54e-01 | 76.5% | 32.9% |
| 3c57B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 70.0 | 6.37e-01 | 100.0% | 71.4% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 72.0 | 5.53e-01 | 100.0% | 45.0% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 74.0 | 6.02e-01 | 100.0% | 68.3% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 74.0 | 5.24e-01 | 100.0% | 46.5% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 70.0 | 5.82e-01 | 100.0% | 56.2% |
| 7s03A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 72.0 | 7.34e-01 | 97.1% | 100.0% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 75.0 | 5.76e-01 | 100.0% | 48.6% |
| 2mezA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.83 | 69.0 | 4.88e-01 | 97.1% | 34.3% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 71.0 | 5.77e-01 | 100.0% | 67.7% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.82 | 69.0 | 5.95e-01 | 100.0% | 60.7% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.82 | 73.0 | 4.58e-01 | 100.0% | 24.2% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.82 | 70.0 | 5.54e-01 | 97.1% | 52.2% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 71.0 | 5.69e-01 | 100.0% | 52.2% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.82 | 74.0 | 5.85e-01 | 100.0% | 59.1% |
| 2o8xA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 71.0 | 5.87e-01 | 100.0% | 70.5% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 70.0 | 5.94e-01 | 100.0% | 60.3% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.82 | 70.0 | 5.92e-01 | 100.0% | 67.2% |
| 1etkA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.82 | 66.0 | 5.27e-01 | 100.0% | 48.0% |
| 5f64A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 68.0 | 5.40e-01 | 100.0% | 46.7% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 67.0 | 5.07e-01 | 100.0% | 40.2% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 70.0 | 5.95e-01 | 100.0% | 62.5% |
| 3cecA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.80 | 69.0 | 5.07e-01 | 100.0% | 40.7% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 68.0 | 5.70e-01 | 100.0% | 58.3% |
| 3iuoA00 | 1.10.10.1390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ | 0.80 | 65.0 | 4.65e-01 | 100.0% | 32.1% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 68.0 | 5.53e-01 | 100.0% | 58.2% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 67.0 | 5.38e-01 | 100.0% | 50.0% |
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 67.0 | 5.17e-01 | 100.0% | 43.8% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.79 | 70.0 | 6.71e-01 | 100.0% | 94.9% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 68.0 | 5.84e-01 | 100.0% | 65.5% |
| 4i2oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 70.0 | 5.21e-01 | 100.0% | 55.0% |
| 5y9sC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 63.0 | 4.93e-01 | 100.0% | 42.7% |
| 4gvpA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.78 | 64.0 | 3.98e-01 | 100.0% | 17.0% |
| 3b02A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 65.0 | 4.83e-01 | 94.1% | 55.3% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 70.0 | 5.17e-01 | 100.0% | 58.5% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 61.0 | 5.90e-01 | 97.1% | 87.8% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.77 | 64.0 | 5.40e-01 | 100.0% | 61.9% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.76 | 66.0 | 4.99e-01 | 100.0% | 45.1% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 66.0 | 5.40e-01 | 100.0% | 60.3% |
| 7pzaA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 66.0 | 4.87e-01 | 100.0% | 57.0% |
| 2r0qC02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 61.0 | 5.37e-01 | 97.1% | 61.8% |
| 1lliA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.75 | 67.0 | 4.89e-01 | 100.0% | 49.4% |
| 5fo5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 58.0 | 4.52e-01 | 100.0% | 39.8% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.75 | 63.0 | 5.42e-01 | 100.0% | 60.7% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 62.0 | 5.58e-01 | 100.0% | 74.0% |
| 2h09A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 63.0 | 5.03e-01 | 100.0% | 57.7% |
| 2fjrA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.74 | 61.0 | 4.85e-01 | 100.0% | 50.0% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.74 | 60.0 | 5.67e-01 | 100.0% | 77.8% |
| 2ia0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 61.0 | 5.40e-01 | 100.0% | 66.7% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.46e-01 | 100.0% | 74.0% |
| 1wi9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 61.0 | 5.23e-01 | 100.0% | 58.6% |
| 2ba3A01 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.72 | 49.0 | 5.01e-01 | 70.6% | 82.8% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.72 | 57.0 | 4.04e-01 | 100.0% | 27.8% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 58.0 | 4.63e-01 | 100.0% | 55.3% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 59.0 | 4.36e-01 | 100.0% | 34.7% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 56.0 | 4.77e-01 | 100.0% | 53.0% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 60.0 | 4.06e-01 | 100.0% | 31.8% |
| 1rr7A02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 56.0 | 5.19e-01 | 100.0% | 68.8% |
| 3py8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.70 | 55.0 | 3.69e-01 | 100.0% | 22.2% |
| 2ek5B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 58.0 | 4.16e-01 | 100.0% | 39.4% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 57.0 | 4.14e-01 | 100.0% | 35.6% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 56.0 | 4.73e-01 | 100.0% | 58.7% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 55.0 | 3.75e-01 | 100.0% | 29.7% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 4.47e-01 | 100.0% | 50.0% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 55.0 | 4.58e-01 | 100.0% | 50.7% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 54.0 | 4.39e-01 | 100.0% | 56.2% |
| 3edpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 52.0 | 4.23e-01 | 100.0% | 48.7% |
| 3ni7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 55.0 | 3.52e-01 | 100.0% | 28.2% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.52 | 41.0 | 3.07e-01 | 100.0% | 53.3% |
| 1rr7A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.52 | 35.0 | 3.41e-01 | 79.4% | 56.5% |
ECOD (80)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4972037 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.98 | 90.0 | 7.78e-01 | 100.0% | 68.0% |
| 4938253 | 101.1.1.9 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 | 0.96 | 86.0 | 8.17e-01 | 100.0% | 90.0% |
| 3603081 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.93 | 83.0 | 6.31e-01 | 100.0% | 46.7% |
| 3284984 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.89 | 79.0 | 4.62e-01 | 100.0% | 14.2% |
| 4963466 | 101.1.1.368 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 | 0.89 | 79.0 | 7.18e-01 | 100.0% | 77.8% |
| 4963467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 77.0 | 7.04e-01 | 100.0% | 77.8% |
| 4987929 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.88 | 77.0 | 6.36e-01 | 100.0% | 58.3% |
| 4160122 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.86 | 77.0 | 4.91e-01 | 100.0% | 24.0% |
| 3963429 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.86 | 76.0 | 6.48e-01 | 100.0% | 65.5% |
| 3180778 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.86 | 76.0 | 6.03e-01 | 100.0% | 50.8% |
| 3589532 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 73.0 | 5.22e-01 | 100.0% | 40.8% |
| 4412897 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.84 | 72.0 | 6.63e-01 | 100.0% | 75.6% |
| 4980028 | 101.1.2.879 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF134 | 0.84 | 75.0 | 5.65e-01 | 100.0% | 45.0% |
| 3962903 | 101.1.2.486 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_58 | 0.84 | 71.0 | 6.80e-01 | 100.0% | 87.5% |
| 3736326 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 75.0 | 5.97e-01 | 100.0% | 55.4% |
| 4386248 | 101.1.1.16 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_WhiA | 0.83 | 75.0 | 5.46e-01 | 100.0% | 62.4% |
| 5002167 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.83 | 66.0 | 6.86e-01 | 88.2% | 100.0% |
| 3282538 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.83 | 72.0 | 5.64e-01 | 100.0% | 47.9% |
| 149489 | 101.1.1.95 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PhyR_sigma-like | 0.82 | 71.0 | 5.42e-01 | 100.0% | 45.0% |
| 2886105 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 72.0 | 6.39e-01 | 100.0% | 73.5% |
| 5024511 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 69.0 | 6.15e-01 | 100.0% | 70.0% |
| 5073467 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.81 | 72.0 | 6.53e-01 | 100.0% | 80.0% |
| 5058606 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 70.0 | 5.35e-01 | 97.1% | 64.0% |
| 5063318 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.80 | 69.0 | 5.94e-01 | 100.0% | 63.6% |
| 5057202 | 101.1.3.8 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Sigma70_r4_2 | 0.80 | 70.0 | 5.50e-01 | 100.0% | 50.0% |
| 5046351 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.80 | 71.0 | 5.35e-01 | 100.0% | 46.3% |
| 5046294 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.80 | 68.0 | 5.79e-01 | 100.0% | 60.0% |
| 5079698 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.80 | 71.0 | 5.83e-01 | 100.0% | 61.7% |
| 5028998 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.80 | 71.0 | 6.01e-01 | 100.0% | 67.3% |
| 5028932 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.80 | 71.0 | 5.84e-01 | 100.0% | 60.0% |
| 4947365 | 101.1.2.873 ↗ | alpha arrays › HTH › HTH › winged helix domain › AsnC_trans_reg | 0.80 | 70.0 | 6.18e-01 | 100.0% | 72.0% |
| 5030878 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.80 | 70.0 | 5.62e-01 | 100.0% | 55.4% |
| 3286027 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.80 | 71.0 | 5.82e-01 | 100.0% | 61.7% |
| 4081344 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.80 | 68.0 | 6.85e-01 | 100.0% | 100.0% |
| 4962330 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 69.0 | 5.16e-01 | 100.0% | 42.4% |
| 4984317 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.79 | 70.0 | 5.95e-01 | 100.0% | 67.3% |
| 5043241 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 66.0 | 6.38e-01 | 100.0% | 85.0% |
| 4979745 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 70.0 | 5.62e-01 | 100.0% | 56.9% |
| 5083248 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.79 | 70.0 | 5.77e-01 | 100.0% | 60.0% |
| 3735470 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 65.0 | 5.40e-01 | 100.0% | 55.4% |
| 3289544 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.79 | 70.0 | 5.59e-01 | 100.0% | 56.9% |
| 3988724 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 65.0 | 5.57e-01 | 100.0% | 58.3% |
| 5055914 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.79 | 68.0 | 5.77e-01 | 97.1% | 60.0% |
| 5049870 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.79 | 69.0 | 5.44e-01 | 100.0% | 52.9% |
| 4967690 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.79 | 70.0 | 6.10e-01 | 100.0% | 72.0% |
| 4978382 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.79 | 69.0 | 5.86e-01 | 100.0% | 67.3% |
| 5000424 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.79 | 69.0 | 5.71e-01 | 100.0% | 60.0% |
| 3787936 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.79 | 64.0 | 5.48e-01 | 100.0% | 56.7% |
| 4977345 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 68.0 | 4.92e-01 | 100.0% | 38.9% |
| 2572 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.78 | 68.0 | 5.56e-01 | 100.0% | 58.7% |
| 5031306 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.78 | 67.0 | 5.77e-01 | 100.0% | 65.5% |
| 4945307 | 101.1.2.873 ↗ | alpha arrays › HTH › HTH › winged helix domain › AsnC_trans_reg | 0.78 | 67.0 | 5.63e-01 | 100.0% | 60.0% |
| 5034428 | 101.1.2.139 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_23 | 0.78 | 67.0 | 5.94e-01 | 100.0% | 72.0% |
| 3279153 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.78 | 68.0 | 5.49e-01 | 100.0% | 55.4% |
| 3693312 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 62.0 | 5.41e-01 | 100.0% | 58.3% |
| 5046856 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 69.0 | 5.87e-01 | 100.0% | 65.5% |
| 5055912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 65.0 | 5.21e-01 | 100.0% | 47.1% |
| 5073261 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.78 | 67.0 | 5.34e-01 | 100.0% | 51.4% |
| 1177545 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.78 | 64.0 | 5.25e-01 | 100.0% | 51.5% |
| 5068679 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.78 | 65.0 | 5.59e-01 | 100.0% | 60.0% |
| 4980059 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.78 | 67.0 | 5.94e-01 | 100.0% | 72.0% |
| 4964807 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.78 | 68.0 | 5.83e-01 | 100.0% | 65.5% |
| 4985252 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.78 | 66.0 | 5.41e-01 | 100.0% | 55.4% |
| 5028930 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.78 | 68.0 | 5.61e-01 | 100.0% | 61.7% |
| 2759 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.77 | 64.0 | 5.35e-01 | 100.0% | 60.0% |
| 4551350 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.77 | 65.0 | 4.78e-01 | 100.0% | 45.3% |
| 4973395 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.77 | 67.0 | 5.55e-01 | 100.0% | 61.7% |
| 4939604 | 101.1.2.465 ↗ | alpha arrays › HTH › HTH › winged helix domain › CdvB_HTH | 0.76 | 66.0 | 5.87e-01 | 100.0% | 77.6% |
| 5009656 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 66.0 | 5.33e-01 | 100.0% | 56.9% |
| 4975892 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.75 | 64.0 | 5.39e-01 | 100.0% | 61.7% |
| 3946981 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.75 | 63.0 | 5.50e-01 | 100.0% | 65.5% |
| 4979740 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.75 | 62.0 | 5.14e-01 | 100.0% | 55.4% |
| 5046761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 64.0 | 5.33e-01 | 100.0% | 60.0% |
| 3210747 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.73 | 61.0 | 5.67e-01 | 100.0% | 75.6% |
| 5030780 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.73 | 58.0 | 5.34e-01 | 100.0% | 70.0% |
| 5011763 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.72 | 58.0 | 5.15e-01 | 100.0% | 65.5% |
| 3904156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 56.0 | 5.36e-01 | 100.0% | 75.6% |
| 3942454 | 101.29.1.0 ↗ | alpha arrays › HTH › helical bundles in heme iron utilization protein-like › helical bundles in heme iron utilization protein-like | 0.66 | 55.0 | 5.29e-01 | 100.0% | 92.5% |
| 5013089 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 4.53e-01 | 100.0% | 80.0% |
| 4495608 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 49.0 | 4.52e-01 | 100.0% | 64.0% |
D5
medium
residues 266-336
Domain cluster:
rep: CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00335__D158-217
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13384.13 best | HTH_23 | 25.2 | 1.50e-05 | 50.7% | 52.0% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e7lA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 50.0 | 5.45e-01 | 74.6% | 85.0% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 46.0 | 4.69e-01 | 74.6% | 72.9% |
| 2fmyA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.50e-01 | 73.2% | 82.9% |
| 2o3fA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 4.44e-01 | 73.2% | 64.6% |
| 4ivnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 4.68e-01 | 78.9% | 75.0% |
| 2sasA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 40.0 | 3.05e-01 | 71.8% | 89.7% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.59 | 43.0 | 3.22e-01 | 76.1% | 80.1% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.57 | 39.0 | 3.79e-01 | 70.4% | 96.2% |
| 2dcnA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 41.0 | 2.75e-01 | 80.3% | 37.7% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 41.0 | 3.45e-01 | 83.1% | 99.2% |
| 1s4kA00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.53 | 39.0 | 3.27e-01 | 77.5% | 99.2% |
| 4jmjA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 37.0 | 2.89e-01 | 80.3% | 84.0% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 36.0 | 3.02e-01 | 77.5% | 72.3% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3890615 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.76 | 50.0 | 5.91e-01 | 74.6% | 98.0% |
| 5039245 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 48.0 | 5.57e-01 | 71.8% | 94.0% |
| 3927026 | 101.1.1.195 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 | 0.74 | 49.0 | 4.62e-01 | 76.1% | 57.6% |
| 3964284 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 50.0 | 5.36e-01 | 70.4% | 85.0% |
| 5027601 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 56.0 | 5.98e-01 | 87.3% | 100.0% |
| 3931679 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 48.0 | 5.61e-01 | 76.1% | 100.0% |
| 3929674 | 101.1.1.195 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 | 0.71 | 48.0 | 5.58e-01 | 80.3% | 100.0% |
| 3928067 | 101.1.1.356 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 | 0.70 | 51.0 | 5.61e-01 | 80.3% | 98.2% |
| 4008322 | 101.1.1.17 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 | 0.70 | 49.0 | 5.51e-01 | 74.6% | 94.5% |
| 3279234 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.70 | 49.0 | 4.97e-01 | 73.2% | 81.4% |
| 3932648 | 101.1.1.195 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_5 | 0.70 | 49.0 | 5.39e-01 | 77.5% | 94.5% |
| 3626689 | 101.1.2.461 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NPRL3 | 0.69 | 51.0 | 4.36e-01 | 78.9% | 50.0% |
| 3937075 | 101.1.1.62 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 | 0.69 | 50.0 | 5.49e-01 | 80.3% | 98.2% |
| 2886105 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 46.0 | 5.33e-01 | 73.2% | 100.0% |
| 4987329 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.69 | 49.0 | 4.65e-01 | 74.6% | 62.4% |
| 5002944 | 101.1.3.11 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_Tnp_ISL3 | 0.69 | 50.0 | 4.14e-01 | 77.5% | 50.4% |
| 5045749 | 101.1.11.203 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 | 0.68 | 48.0 | 4.97e-01 | 73.2% | 83.1% |
| 3948446 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.68 | 48.0 | 4.73e-01 | 73.2% | 72.0% |
| 3509611 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 48.0 | 5.32e-01 | 76.1% | 96.4% |
| 3948411 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.67 | 48.0 | 4.75e-01 | 74.6% | 72.0% |
| 3257433 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 44.0 | 3.56e-01 | 74.6% | 35.6% |
| 3944312 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.67 | 47.0 | 4.93e-01 | 73.2% | 83.1% |
| 5027752 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.67 | 53.0 | 5.12e-01 | 85.9% | 86.3% |
| 4377139 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.67 | 47.0 | 4.58e-01 | 74.6% | 71.2% |
| 3808581 | 101.1.4.86 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › RWP-RK | 0.66 | 51.0 | 5.32e-01 | 85.9% | 90.8% |
| 5014241 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.66 | 47.0 | 4.48e-01 | 74.6% | 62.4% |
| 3943585 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.66 | 47.0 | 4.48e-01 | 74.6% | 67.1% |
| 2555 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.66 | 46.0 | 4.42e-01 | 73.2% | 63.9% |
| 3941471 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.66 | 48.0 | 4.91e-01 | 77.5% | 81.4% |
| 4477930 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.66 | 47.0 | 4.42e-01 | 74.6% | 63.5% |
| 3713798 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.65 | 45.0 | 4.28e-01 | 71.8% | 75.3% |
| 5074938 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 47.0 | 5.26e-01 | 80.3% | 100.0% |
| 3933478 | 101.1.1.197 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › IF2_N | 0.65 | 49.0 | 5.11e-01 | 91.5% | 89.2% |
| 4518856 | 101.1.1.11 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_6 | 0.63 | 44.0 | 4.37e-01 | 73.2% | 70.7% |
| 3987508 | 102.1.1.32 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_9 | 0.63 | 43.0 | 4.22e-01 | 70.4% | 81.3% |
| 5029951 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 43.0 | 4.47e-01 | 73.2% | 90.8% |
| 5011499 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 41.0 | 4.31e-01 | 70.4% | 100.0% |
| 5038599 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.59 | 48.0 | 4.03e-01 | 90.1% | 84.8% |
| 3942599 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 43.0 | 4.21e-01 | 78.9% | 86.3% |
| 2780 | 101.1.4.10 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DUF1870 | 0.53 | 39.0 | 3.27e-01 | 77.5% | 99.2% |
| 3804466 | 109.4.1.1258 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 | 0.53 | 42.0 | 2.99e-01 | 88.7% | 87.2% |
| 3419446 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.52 | 35.0 | 3.54e-01 | 83.1% | 70.0% |
| 3341479 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.52 | 34.0 | 3.43e-01 | 73.2% | 67.1% |
| 3372578 | 109.4.1.1305 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long, TPR_24 | 0.51 | 39.0 | 2.42e-01 | 83.1% | 26.9% |
| 3926773 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.50 | 37.0 | 3.49e-01 | 81.7% | 73.7% |