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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00225
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00225
Identity
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-49
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.67 | 52.0 | 3.93e-01 | 100.0% | 33.9% |
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.65 | 48.0 | 3.83e-01 | 100.0% | 37.3% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.53 | 36.0 | 3.74e-01 | 73.3% | 97.0% |
| 2hf1A01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 40.0 | 3.81e-01 | 93.3% | 70.9% |
| 2kxqA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 33.0 | 3.51e-01 | 97.8% | 96.7% |
| 5cq2A02 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.51 | 35.0 | 3.56e-01 | 75.6% | 79.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946781 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.80 | 67.0 | 6.78e-01 | 97.8% | 95.6% |
| 4234481 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.75 | 59.0 | 3.46e-01 | 100.0% | 10.8% |
| 5034087 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 55.0 | 5.69e-01 | 86.7% | 90.0% |
| 4235440 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 58.0 | 5.65e-01 | 100.0% | 84.0% |
| 3229548 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 51.0 | 5.15e-01 | 100.0% | 88.9% |
| 3259717 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.66 | 49.0 | 4.75e-01 | 91.1% | 72.0% |
| 4076701 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 52.0 | 5.09e-01 | 100.0% | 84.0% |
| 3451552 | 375.1.4.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0.65 | 54.0 | 5.23e-01 | 100.0% | 83.3% |
| 3604946 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.65 | 51.0 | 3.10e-01 | 100.0% | 13.2% |
| 3253644 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.65 | 42.0 | 3.32e-01 | 100.0% | 30.0% |
| 3205074 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 47.0 | 4.68e-01 | 100.0% | 84.0% |
| 4551548 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.60 | 47.0 | 2.65e-01 | 100.0% | 7.5% |
| 4962276 | 4.26.1.10 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › DUF7837 | 0.59 | 42.0 | 4.26e-01 | 86.7% | 97.8% |
| 3989372 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 46.0 | 4.56e-01 | 100.0% | 82.0% |
| 4962054 | 375.1.1.345 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7837 | 0.59 | 44.0 | 4.44e-01 | 93.3% | 97.8% |
| 3477189 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.57 | 43.0 | 4.32e-01 | 100.0% | 93.3% |
| 3489460 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.57 | 38.0 | 3.98e-01 | 75.6% | 97.1% |
| 3992209 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 38.0 | 3.85e-01 | 73.3% | 75.6% |
| 3871804 | 375.1.1.256 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Pellino_RING | 0.55 | 44.0 | 3.92e-01 | 100.0% | 64.0% |
| 3404953 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 38.0 | 3.92e-01 | 73.3% | 85.0% |
| 3708672 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.52 | 37.0 | 3.10e-01 | 75.6% | 40.0% |
| 4013258 | 301.8.1.3 ↗ | a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › AASDHPPT_N | 0.52 | 41.0 | 3.10e-01 | 97.8% | 40.0% |
| 3925225 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 36.0 | 3.87e-01 | 88.9% | 88.6% |
| 3596701 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.51 | 36.0 | 3.05e-01 | 75.6% | 42.5% |
| 3415601 | 73.1.1.13 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_RING | 0.51 | 39.0 | 3.57e-01 | 100.0% | 65.3% |