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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00231
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00231
Identity
- Kingdom:
- phage
Quality
66.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-120
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qg7B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.74 | 54.0 | 5.10e-01 | 85.7% | 64.4% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.71 | 51.0 | 5.59e-01 | 100.0% | 97.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 49.0 | 5.09e-01 | 85.7% | 78.9% |
| 4exrA01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 45.0 | 4.56e-01 | 85.7% | 69.1% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 49.0 | 4.91e-01 | 85.7% | 75.9% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.66 | 52.0 | 4.65e-01 | 85.7% | 87.5% |
| 4i8oA02 | 3.30.160.690 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain | 0.64 | 42.0 | 4.11e-01 | 84.5% | 61.1% |
| 4id2A00 | 2.40.128.510 | Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 | 0.64 | 49.0 | 4.20e-01 | 86.9% | 50.7% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 41.0 | 4.24e-01 | 75.0% | 69.6% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.64 | 41.0 | 4.54e-01 | 83.3% | 85.7% |
| 8ouzD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 46.0 | 3.32e-01 | 76.2% | 98.7% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 40.0 | 4.49e-01 | 79.8% | 87.7% |
| 1gpqB00 | 3.40.1420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme | 0.61 | 54.0 | 4.74e-01 | 100.0% | 95.3% |
| 3sxxC01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 48.0 | 4.47e-01 | 85.7% | 70.6% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 4.24e-01 | 85.7% | 90.9% |
| 1xfdA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.58 | 53.0 | 3.29e-01 | 100.0% | 27.4% |
| 1lgyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 44.0 | 3.11e-01 | 81.0% | 53.2% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 40.0 | 4.55e-01 | 79.8% | 95.2% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.58 | 47.0 | 3.00e-01 | 100.0% | 17.4% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 38.0 | 4.21e-01 | 81.0% | 86.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 38.0 | 4.01e-01 | 82.1% | 74.7% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 39.0 | 4.39e-01 | 79.8% | 95.2% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.22e-01 | 95.2% | 35.0% |
| 6eugA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 48.0 | 3.18e-01 | 94.0% | 45.0% |
| 1lf6A01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 48.0 | 3.43e-01 | 97.6% | 80.6% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 44.0 | 4.17e-01 | 88.1% | 95.0% |
| 2w38A01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.55 | 49.0 | 3.30e-01 | 98.8% | 31.7% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 49.0 | 3.29e-01 | 100.0% | 38.5% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 49.0 | 3.87e-01 | 100.0% | 54.6% |
| 1z94B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 42.0 | 3.47e-01 | 81.0% | 58.7% |
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 49.0 | 3.29e-01 | 100.0% | 43.3% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 42.0 | 3.81e-01 | 85.7% | 86.8% |
| 2wozA00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.54 | 48.0 | 3.22e-01 | 96.4% | 29.3% |
| 4hn7A00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 44.0 | 4.46e-01 | 91.7% | 100.0% |
| 1h6lA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 48.0 | 3.13e-01 | 100.0% | 72.0% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.53 | 47.0 | 3.15e-01 | 100.0% | 42.9% |
| 3f40A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 41.0 | 3.78e-01 | 85.7% | 82.9% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 38.0 | 3.07e-01 | 85.7% | 38.9% |
| 3gniB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 42.0 | 4.12e-01 | 86.9% | 100.0% |
| 2xzsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 42.0 | 4.12e-01 | 88.1% | 96.7% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.91e-01 | 82.1% | 90.1% |
| 3vwaA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 41.0 | 4.00e-01 | 85.7% | 95.6% |
| 6ygnA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.63e-01 | 83.3% | 75.9% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.50 | 45.0 | 3.58e-01 | 98.8% | 55.4% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3363058 | 5.1.8.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 | 0.82 | 52.0 | 3.73e-01 | 82.1% | 24.4% |
| 3364229 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.79 | 54.0 | 3.57e-01 | 86.9% | 19.2% |
| 4225063 | 3840.1.1.2 ↗ | a+b two layers › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › Bacterial conjugation factor PsiB › PerB | 0.77 | 52.0 | 4.76e-01 | 70.2% | 60.9% |
| 5030911 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.71 | 54.0 | 5.46e-01 | 82.1% | 81.9% |
| 1678533 | 243.3.1.10 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 | 0.70 | 49.0 | 5.33e-01 | 85.7% | 88.6% |
| 4946504 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.70 | 47.0 | 5.04e-01 | 83.3% | 82.9% |
| 3988703 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 47.0 | 5.24e-01 | 81.0% | 89.2% |
| 4946882 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 42.0 | 5.04e-01 | 79.8% | 92.7% |
| 3973606 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.68 | 40.0 | 4.75e-01 | 81.0% | 90.9% |
| 1153941 | 243.4.1.2 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbG_N | 0.67 | 51.0 | 4.93e-01 | 98.8% | 72.9% |
| 5041343 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.66 | 49.0 | 5.12e-01 | 85.7% | 88.0% |
| 3965259 | 243.3.1.16 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 | 0.66 | 42.0 | 4.47e-01 | 86.9% | 74.3% |
| 3735975 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.66 | 48.0 | 4.84e-01 | 86.9% | 76.5% |
| 5054384 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.64 | 42.0 | 4.50e-01 | 85.7% | 80.0% |
| 3540354 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.63 | 45.0 | 4.79e-01 | 82.1% | 92.6% |
| 3189324 | 375.1.1.319 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 | 0.62 | 46.0 | 4.99e-01 | 83.3% | 95.7% |
| 3375457 | 4.1.1.159 ↗ | beta barrels › SH3 › SH3 › SH3 › Saf4_Yju2 | 0.62 | 47.0 | 4.91e-01 | 84.5% | 90.7% |
| 3632911 | 243.3.1.49 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 | 0.62 | 47.0 | 4.71e-01 | 83.3% | 81.2% |
| 4988831 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 39.0 | 4.68e-01 | 83.3% | 100.0% |
| 3241605 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.61 | 49.0 | 3.30e-01 | 86.9% | 25.8% |
| 3254426 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.59 | 42.0 | 3.56e-01 | 98.8% | 46.7% |
| 4505397 | 5087.1.1.0 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 | 0.58 | 47.0 | 3.42e-01 | 88.1% | 46.3% |
| 3666904 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.58 | 52.0 | 3.49e-01 | 98.8% | 59.7% |
| 3848556 | 5.1.4.417 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › KNTC1_N | 0.58 | 47.0 | 3.08e-01 | 90.5% | 36.7% |
| 4561170 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.58 | 53.0 | 3.28e-01 | 100.0% | 28.1% |
| 4028913 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 50.0 | 3.26e-01 | 98.8% | 46.3% |
| 3699727 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 51.0 | 3.29e-01 | 96.4% | 35.9% |
| 4510748 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.57 | 50.0 | 3.90e-01 | 95.2% | 57.1% |
| 3660574 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 51.0 | 3.32e-01 | 100.0% | 36.8% |
| 3397645 | 5.1.4.85 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N | 0.56 | 52.0 | 3.44e-01 | 100.0% | 45.9% |
| 3296531 | 5.1.4.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 | 0.56 | 46.0 | 3.02e-01 | 100.0% | 20.3% |
| 2462934 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 51.0 | 3.44e-01 | 100.0% | 38.9% |
| None | — | 0.54 | 49.0 | 2.87e-01 | 100.0% | 20.2% | |
| 3583021 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.54 | 49.0 | 3.12e-01 | 100.0% | 48.9% |
| 3376441 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.54 | 48.0 | 3.24e-01 | 98.8% | 48.0% |
| 5034929 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 43.0 | 3.22e-01 | 86.9% | 81.8% |
| 3255468 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 46.0 | 3.40e-01 | 95.2% | 45.8% |
| 3831707 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.54 | 48.0 | 3.16e-01 | 100.0% | 46.8% |
| 4939670 | 5.1.3.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 | 0.54 | 48.0 | 3.29e-01 | 100.0% | 37.3% |
| 3444588 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 48.0 | 3.15e-01 | 100.0% | 49.3% |
| 3466098 | 5.1.4.101 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 | 0.53 | 44.0 | 3.00e-01 | 100.0% | 24.4% |
| 3383121 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.53 | 47.0 | 3.19e-01 | 100.0% | 38.7% |
| 3924155 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 47.0 | 2.74e-01 | 100.0% | 17.6% |
| 3916602 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.53 | 46.0 | 3.09e-01 | 96.4% | 27.0% |
| 3802832 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.53 | 43.0 | 2.88e-01 | 98.8% | 23.1% |
| 3822639 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 47.0 | 3.12e-01 | 100.0% | 44.7% |
| 3829694 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.52 | 47.0 | 3.17e-01 | 100.0% | 46.7% |
| 3737401 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 45.0 | 4.43e-01 | 96.4% | 88.9% |
| 3607725 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 46.0 | 2.99e-01 | 100.0% | 44.4% |
| 3841474 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.52 | 43.0 | 2.99e-01 | 91.7% | 72.9% |
| 3421076 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.51 | 44.0 | 3.03e-01 | 98.8% | 39.0% |