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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00236
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00236
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-153
Domain cluster:
rep: Filtrate_w_scaffold_3_prodigal-single.1__X__X__00319__D47-140
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hzrA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 51.0 | 4.62e-01 | 78.5% | 65.2% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 53.0 | 4.69e-01 | 86.8% | 88.0% |
| 1jmxA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.65 | 48.0 | 5.05e-01 | 76.9% | 92.7% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 48.0 | 4.46e-01 | 79.3% | 91.5% |
| 3n91A02 | 2.40.128.420 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 48.0 | 4.60e-01 | 78.5% | 97.8% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 48.0 | 5.07e-01 | 78.5% | 88.8% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 58.0 | 5.33e-01 | 100.0% | 96.1% |
| 4xrtA02 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 44.0 | 4.00e-01 | 75.2% | 77.5% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.59 | 45.0 | 3.23e-01 | 78.5% | 57.5% |
| 2q03A00 | 2.40.350.10 | Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like | 0.59 | 46.0 | 4.51e-01 | 82.6% | 93.2% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 41.0 | 3.69e-01 | 76.0% | 73.9% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 39.0 | 3.59e-01 | 72.7% | 97.0% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 40.0 | 3.70e-01 | 76.0% | 79.6% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 35.0 | 3.98e-01 | 91.7% | 93.2% |
| 4nzfD02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 34.0 | 3.79e-01 | 98.3% | 87.8% |
| 1mveA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.18e-01 | 81.8% | 71.1% |
| 3u9sE04 | 3.30.700.40 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.51 | 35.0 | 3.51e-01 | 70.2% | 88.8% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 45.0 | 3.64e-01 | 99.2% | 90.8% |
| 1qwrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 29.0 | 3.26e-01 | 100.0% | 74.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940665 | 9.16.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 | 0.92 | 56.0 | 6.86e-01 | 78.5% | 91.5% |
| 3342595 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.78 | 58.0 | 5.12e-01 | 77.7% | 71.1% |
| 3973757 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.72 | 55.0 | 4.93e-01 | 78.5% | 70.0% |
| 3945059 | 9.1.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE | 0.69 | 52.0 | 5.59e-01 | 78.5% | 92.4% |
| 3266624 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.69 | 52.0 | 5.42e-01 | 78.5% | 91.8% |
| 3952469 | 3794.1.1.2 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT | 0.66 | 42.0 | 4.09e-01 | 79.3% | 58.5% |
| 3412551 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.65 | 37.0 | 4.66e-01 | 100.0% | 91.9% |
| 3875866 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.65 | 48.0 | 4.29e-01 | 77.7% | 64.7% |
| 4451493 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.65 | 51.0 | 4.56e-01 | 84.3% | 84.9% |
| 3060391 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.63 | 47.0 | 4.86e-01 | 77.7% | 93.0% |
| 5081327 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.62 | 46.0 | 4.76e-01 | 76.9% | 94.7% |
| 3404988 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.62 | 42.0 | 4.09e-01 | 80.2% | 62.2% |
| 3961274 | 3794.1.1.2 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT | 0.59 | 45.0 | 4.45e-01 | 80.2% | 83.8% |
| 3282190 | 3794.1.1.2 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT | 0.59 | 46.0 | 4.58e-01 | 81.8% | 88.0% |
| 4001388 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.59 | 53.0 | 4.01e-01 | 100.0% | 63.7% |
| 3970247 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.57 | 47.0 | 4.96e-01 | 98.3% | 98.2% |
| 3476559 | 5.1.13.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 | 0.55 | 41.0 | 3.04e-01 | 78.5% | 84.3% |
| 3878636 | 3794.1.1.0 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit | 0.54 | 41.0 | 3.87e-01 | 79.3% | 82.1% |
| 3357113 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.52 | 36.0 | 3.31e-01 | 93.4% | 53.3% |
| 3223253 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.51 | 35.0 | 3.54e-01 | 71.1% | 83.2% |
| 3284644 | 243.1.1.71 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF8176 | 0.51 | 35.0 | 3.46e-01 | 70.2% | 100.0% |