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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00276
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00276
Identity
- Kingdom:
- phage
Quality
70.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-123
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 39.0 | 3.50e-01 | 88.6% | 44.2% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.61 | 39.0 | 3.99e-01 | 79.5% | 67.1% |
| 6g1dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 35.0 | 3.65e-01 | 96.6% | 64.6% |
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.57 | 43.0 | 3.13e-01 | 81.8% | 60.5% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.57 | 44.0 | 4.28e-01 | 87.5% | 76.3% |
| 2fji102 | 1.10.357.70 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain | 0.57 | 49.0 | 3.94e-01 | 100.0% | 63.2% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 34.0 | 3.13e-01 | 96.6% | 41.9% |
| 3maeA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.57 | 42.0 | 3.17e-01 | 80.7% | 64.5% |
| 4gpkF02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 40.0 | 2.94e-01 | 100.0% | 27.9% |
| 6oinA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 35.0 | 3.83e-01 | 89.8% | 82.1% |
| 6nsjA00 | 1.25.40.600 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › AmiS/UreI transporter | 0.55 | 41.0 | 3.36e-01 | 81.8% | 85.7% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 34.0 | 3.48e-01 | 96.6% | 62.4% |
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 34.0 | 3.44e-01 | 89.8% | 60.7% |
| 1ka1A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.54 | 40.0 | 3.08e-01 | 80.7% | 86.3% |
| 4v19K02 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.54 | 42.0 | 4.45e-01 | 95.5% | 98.7% |
| 4cthA02 | 1.10.1380.10 | Mainly Alpha › Orthogonal Bundle › Neutral endopeptidase; domain 2 › Neutral endopeptidase , domain2 | 0.53 | 40.0 | 2.66e-01 | 80.7% | 24.3% |
| 2bh7A02 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.53 | 45.0 | 3.83e-01 | 97.7% | 97.4% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.52 | 43.0 | 3.93e-01 | 89.8% | 82.8% |
| 3mpiA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.52 | 46.0 | 4.15e-01 | 100.0% | 76.9% |
| 3hhgE01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 30.0 | 3.01e-01 | 70.5% | 54.5% |
| 3ihvA03 | 1.25.40.900 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 38.0 | 3.32e-01 | 79.5% | 88.5% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.98e-01 | 100.0% | 76.9% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.50 | 43.0 | 3.79e-01 | 96.6% | 96.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3569785 | 3226.1.1.2 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp | 0.65 | 48.0 | 3.07e-01 | 79.5% | 41.1% |
| 3594015 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 55.0 | 4.16e-01 | 100.0% | 45.0% |
| 4031672 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.60 | 36.0 | 3.76e-01 | 96.6% | 65.0% |
| 3284225 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 35.0 | 3.69e-01 | 92.0% | 66.3% |
| 3691819 | 5050.1.1.14 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 | 0.57 | 43.0 | 3.22e-01 | 80.7% | 82.6% |
| 3505456 | 5067.1.1.16 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MgtC | 0.57 | 46.0 | 3.99e-01 | 88.6% | 62.1% |
| 4028620 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 49.0 | 4.09e-01 | 98.9% | 78.8% |
| 3945655 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.57 | 35.0 | 3.55e-01 | 96.6% | 58.9% |
| 3979933 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 35.0 | 3.42e-01 | 92.0% | 56.8% |
| 5015226 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.55 | 30.0 | 2.98e-01 | 72.7% | 47.8% |
| 3986748 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.54 | 34.0 | 3.44e-01 | 92.0% | 61.1% |
| 4938105 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.54 | 43.0 | 3.52e-01 | 87.5% | 70.0% |
| 3946198 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.54 | 34.0 | 3.45e-01 | 88.6% | 63.5% |
| 3936543 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 41.0 | 3.10e-01 | 100.0% | 31.5% |
| 4588125 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.54 | 33.0 | 3.47e-01 | 92.0% | 67.5% |
| 4505595 | 605.6.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like | 0.54 | 36.0 | 3.49e-01 | 71.6% | 61.0% |
| 3489921 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.52 | 41.0 | 2.90e-01 | 85.2% | 78.3% |
| 2429478 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.52 | 39.0 | 3.00e-01 | 84.1% | 69.3% |
| 3787647 | 192.2.1.31 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › PRA1 | 0.51 | 32.0 | 3.08e-01 | 78.4% | 54.0% |
| 3967258 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 32.0 | 3.35e-01 | 88.6% | 68.8% |
| 4371313 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.51 | 34.0 | 3.40e-01 | 92.0% | 64.2% |
| 3598773 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.50 | 40.0 | 3.08e-01 | 88.6% | 84.5% |
| 3883917 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.50 | 42.0 | 3.32e-01 | 95.5% | 60.0% |