←Back to structures
SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00296
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00296
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
rep: IMGVR_UViG_3300028602_002087-3300028602-Ga0265294_1000673614__D3-70
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bb7A01 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.66 | 56.0 | 4.09e-01 | 98.3% | 41.4% |
| 6zxfz01 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.65 | 45.0 | 3.53e-01 | 71.7% | 87.0% |
| 1w0pA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 53.0 | 3.81e-01 | 100.0% | 54.8% |
| 3o44A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 45.0 | 3.64e-01 | 83.3% | 96.0% |
| 2cswA01 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.60 | 51.0 | 4.11e-01 | 100.0% | 99.2% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 51.0 | 3.66e-01 | 100.0% | 67.4% |
| 4a4yA01 | 2.60.200.50 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.58 | 46.0 | 3.97e-01 | 88.3% | 85.7% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 45.0 | 2.89e-01 | 86.7% | 83.0% |
| 5kiqA02 | 3.10.20.890 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 42.0 | 3.99e-01 | 78.3% | 81.9% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 44.0 | 3.51e-01 | 88.3% | 84.4% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.57 | 43.0 | 2.81e-01 | 85.0% | 50.3% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 43.0 | 4.05e-01 | 83.3% | 72.6% |
| 8gzhC01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.56 | 46.0 | 3.41e-01 | 95.0% | 91.7% |
| 3ltiA01 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.56 | 47.0 | 3.50e-01 | 95.0% | 97.0% |
| 3eebA00 | 3.40.50.11050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain | 0.55 | 43.0 | 3.04e-01 | 88.3% | 58.5% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.54 | 43.0 | 3.61e-01 | 100.0% | 48.7% |
| 1w1hD00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 42.0 | 3.33e-01 | 88.3% | 78.1% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 46.0 | 4.26e-01 | 100.0% | 97.5% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.54 | 41.0 | 3.49e-01 | 86.7% | 89.9% |
| 2x8fA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 42.0 | 2.76e-01 | 90.0% | 87.4% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.41e-01 | 70.0% | 71.2% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 2.86e-01 | 88.3% | 96.8% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 42.0 | 3.94e-01 | 95.0% | 93.9% |
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 4.05e-01 | 98.3% | 85.7% |
| 3dueA00 | 3.40.1420.30 | Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › | 0.53 | 35.0 | 2.88e-01 | 71.7% | 70.1% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 37.0 | 3.89e-01 | 85.0% | 96.0% |
| 1ms5B02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.00e-01 | 100.0% | 40.5% |
| 1vpkA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 38.0 | 3.25e-01 | 85.0% | 80.7% |
| 4dnuA00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.51 | 40.0 | 2.49e-01 | 88.3% | 97.0% |
| 3gasA01 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.51 | 37.0 | 3.46e-01 | 80.0% | 100.0% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588096 | 4.1.1.189 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2829 | 0.90 | 84.0 | 7.75e-01 | 100.0% | 95.9% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.65 | 55.0 | 4.25e-01 | 100.0% | 41.4% |
| 3265851 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.63 | 41.0 | 4.76e-01 | 76.7% | 100.0% |
| 3263689 | 5.1.4.348 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_1st | 0.63 | 48.0 | 2.97e-01 | 83.3% | 38.9% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.50e-01 | 96.7% | 91.1% |
| 3708283 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 52.0 | 4.73e-01 | 100.0% | 91.8% |
| 3401697 | 4357.1.1.4 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_3 | 0.61 | 44.0 | 4.02e-01 | 80.0% | 72.9% |
| 4937423 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.59e-01 | 98.3% | 82.4% |
| 3972956 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.60 | 49.0 | 3.83e-01 | 100.0% | 40.0% |
| 4279208 | 236.1.1.0 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain | 0.60 | 45.0 | 3.41e-01 | 83.3% | 67.9% |
| 169882 | 10.1.1.32 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser | 0.59 | 50.0 | 3.58e-01 | 100.0% | 49.7% |
| 3846365 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 45.0 | 2.85e-01 | 85.0% | 95.8% |
| 3300456 | 375.1.1.9 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom | 0.58 | 40.0 | 3.45e-01 | 73.3% | 87.0% |
| 3455806 | 5.1.2.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 | 0.58 | 42.0 | 3.07e-01 | 78.3% | 69.1% |
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.57 | 47.0 | 3.77e-01 | 98.3% | 43.7% |
| 5035934 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 46.0 | 4.52e-01 | 96.7% | 90.8% |
| 3924073 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 42.0 | 3.62e-01 | 85.0% | 77.1% |
| 4027422 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.56 | 42.0 | 4.34e-01 | 91.7% | 92.7% |
| 3741445 | 241.4.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 | 0.56 | 42.0 | 3.64e-01 | 85.0% | 75.0% |
| 3703666 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.56 | 43.0 | 3.20e-01 | 86.7% | 49.4% |
| 3967108 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.56 | 31.0 | 3.66e-01 | 83.3% | 80.0% |
| 5054507 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 40.0 | 3.79e-01 | 78.3% | 86.7% |
| 146634 | 4.1.1.119 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5606 | 0.55 | 39.0 | 4.09e-01 | 83.3% | 93.9% |
| 3931922 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 40.0 | 2.51e-01 | 80.0% | 25.7% |
| 2772566 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.55 | 42.0 | 3.56e-01 | 100.0% | 47.4% |
| 3815957 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 43.0 | 2.75e-01 | 88.3% | 84.7% |
| 3915890 | 10.1.1.5 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Pentaxin | 0.54 | 42.0 | 3.52e-01 | 88.3% | 70.9% |
| 3703874 | 10.1.1.56 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C | 0.53 | 44.0 | 3.03e-01 | 100.0% | 40.8% |
| 4964361 | 502.1.1.3 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › DUF7348 | 0.53 | 45.0 | 4.31e-01 | 98.3% | 91.4% |
| 3695663 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 3.09e-01 | 88.3% | 63.8% |
| 3924553 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.53 | 41.0 | 3.55e-01 | 85.0% | 75.8% |
| 4147290 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.52 | 42.0 | 4.17e-01 | 98.3% | 87.7% |
| 3509403 | 6129.1.1.0 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family | 0.52 | 42.0 | 2.94e-01 | 100.0% | 61.2% |
| 3963450 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.52 | 41.0 | 3.35e-01 | 96.7% | 43.0% |
| 3335113 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.52 | 40.0 | 3.57e-01 | 88.3% | 77.8% |
| 4579655 | 5.1.4.38 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 | 0.51 | 39.0 | 2.40e-01 | 85.0% | 27.4% |
| 3507591 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 37.0 | 2.45e-01 | 78.3% | 42.4% |
| 2832395 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.51 | 41.0 | 3.03e-01 | 100.0% | 81.8% |