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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00367
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00367
Identity
- Kingdom:
- phage
Quality
51.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1189-1280
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 60.0 | 6.16e-01 | 100.0% | 97.8% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 62.0 | 6.29e-01 | 98.9% | 100.0% |
| 5tk2B00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.66 | 44.0 | 4.53e-01 | 70.7% | 71.6% |
| 4dnyA00 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 56.0 | 5.39e-01 | 98.9% | 89.0% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.64 | 51.0 | 4.95e-01 | 100.0% | 77.4% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.61 | 49.0 | 4.17e-01 | 100.0% | 52.2% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.60 | 49.0 | 4.15e-01 | 100.0% | 52.5% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 49.0 | 4.56e-01 | 100.0% | 73.8% |
| 1vx7O02 | 3.100.10.10 | Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › | 0.56 | 38.0 | 3.86e-01 | 70.7% | 84.6% |
| 3h6gA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 3.76e-01 | 100.0% | 80.4% |
| 3om0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 3.80e-01 | 100.0% | 83.7% |
| 2rflH00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.50 | 45.0 | 3.78e-01 | 100.0% | 66.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942383 | 520.2.1.0 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE | 0.91 | 81.0 | 8.21e-01 | 95.7% | 95.6% |
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.69 | 59.0 | 6.03e-01 | 96.7% | 97.7% |
| 185692 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.65 | 56.0 | 5.39e-01 | 98.9% | 89.0% |
| 7233 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.64 | 51.0 | 4.93e-01 | 100.0% | 76.6% |
| 4475590 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.62 | 51.0 | 4.91e-01 | 100.0% | 81.0% |
| 3982197 | 207.2.1.25 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA | 0.61 | 53.0 | 3.46e-01 | 96.7% | 22.5% |
| 4561709 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.61 | 53.0 | 5.35e-01 | 97.8% | 100.0% |
| 4121946 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.60 | 49.0 | 4.12e-01 | 100.0% | 52.9% |
| 3492291 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.60 | 48.0 | 4.02e-01 | 100.0% | 49.7% |
| 4651440 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.59 | 50.0 | 4.74e-01 | 100.0% | 79.1% |
| 4937676 | 3156.1.1.0 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related | 0.59 | 39.0 | 4.07e-01 | 70.7% | 73.5% |
| 4183596 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.59 | 52.0 | 3.81e-01 | 100.0% | 61.9% |
| 3708794 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.58 | 49.0 | 4.04e-01 | 100.0% | 50.9% |
| 4419821 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.57 | 49.0 | 4.65e-01 | 100.0% | 79.1% |
| 4256807 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.55 | 47.0 | 3.78e-01 | 95.7% | 61.6% |
| 4270486 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.55 | 48.0 | 3.49e-01 | 98.9% | 40.7% |
| 4108875 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.55 | 46.0 | 3.60e-01 | 100.0% | 74.5% |
| 3332923 | 207.1.1.133 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 | 0.55 | 48.0 | 3.47e-01 | 100.0% | 33.7% |
| 4496449 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.54 | 47.0 | 4.56e-01 | 100.0% | 91.2% |
| 4332884 | 207.2.1.78 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin, AIDA | 0.54 | 45.0 | 3.25e-01 | 95.7% | 37.3% |
| 3987739 | 207.4.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CFSR | 0.53 | 46.0 | 3.47e-01 | 100.0% | 59.6% |
| 4392246 | 207.2.1.10 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin | 0.52 | 45.0 | 2.78e-01 | 100.0% | 16.8% |
D2
medium
residues 1-134
D3
medium
residues 202-403_417-472
D4
medium
residues 774-808_824-985_997-1010
D5
medium
residues 1107-1185