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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00388
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00388
Identity
- Kingdom:
- phage
Quality
69.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.81 | 63.0 | 4.41e-01 | 80.7% | 30.1% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.81 | 64.0 | 6.10e-01 | 84.3% | 77.1% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 60.0 | 5.93e-01 | 80.7% | 77.3% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.78 | 60.0 | 5.45e-01 | 80.7% | 66.4% |
| 4lwsA00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.77 | 57.0 | 5.32e-01 | 80.7% | 64.0% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 57.0 | 4.86e-01 | 79.5% | 50.7% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.76 | 67.0 | 4.95e-01 | 96.4% | 50.5% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 52.0 | 4.41e-01 | 73.5% | 48.1% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.73 | 52.0 | 4.69e-01 | 73.5% | 56.4% |
| 2qnlA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.73 | 62.0 | 4.93e-01 | 92.8% | 100.0% |
| 1a7eA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.72 | 55.0 | 4.89e-01 | 80.7% | 66.1% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.72 | 54.0 | 5.64e-01 | 78.3% | 90.5% |
| 2d1lA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 63.0 | 4.55e-01 | 100.0% | 85.5% |
| 2bdeA03 | 1.20.58.1160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 50.0 | 5.21e-01 | 72.3% | 77.9% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.72 | 52.0 | 4.96e-01 | 77.1% | 64.6% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 49.0 | 5.16e-01 | 71.1% | 81.3% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.72 | 54.0 | 5.25e-01 | 79.5% | 78.9% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 49.0 | 4.67e-01 | 79.5% | 67.6% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 48.0 | 4.58e-01 | 78.3% | 67.7% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.65 | 49.0 | 4.48e-01 | 80.7% | 68.2% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.70e-01 | 81.9% | 93.1% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.64 | 50.0 | 4.52e-01 | 84.3% | 80.7% |
| 1yisA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.63 | 55.0 | 5.12e-01 | 95.2% | 100.0% |
| 1zvuA03 | 1.10.268.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase; domain 3 › Topoisomerase, domain 3 | 0.62 | 50.0 | 4.19e-01 | 86.7% | 77.1% |
| 2ex3B01 | 6.10.250.960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 48.0 | 4.99e-01 | 84.3% | 100.0% |
| 2vklA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.60 | 45.0 | 4.73e-01 | 80.7% | 89.6% |
| 2wmoA01 | 1.25.40.410 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DOCK DHR2 domain, lobe A | 0.59 | 45.0 | 3.80e-01 | 80.7% | 61.9% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.57 | 46.0 | 4.73e-01 | 88.0% | 91.4% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 33.0 | 3.28e-01 | 72.3% | 54.4% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.53 | 31.0 | 2.84e-01 | 77.1% | 41.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3308724 | 3721.1.1.2 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 | 0.86 | 77.0 | 7.47e-01 | 97.6% | 86.7% |
| 5049284 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.86 | 65.0 | 5.61e-01 | 78.3% | 65.0% |
| 3968781 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.86 | 64.0 | 5.22e-01 | 78.3% | 69.7% |
| 4680446 | 3914.1.1.4 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMC | 0.84 | 60.0 | 3.61e-01 | 73.5% | 13.2% |
| 3575794 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.83 | 61.0 | 5.25e-01 | 79.5% | 51.2% |
| 3241303 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.81 | 64.0 | 6.56e-01 | 84.3% | 97.5% |
| 3690804 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.80 | 61.0 | 3.95e-01 | 79.5% | 59.7% |
| 4983118 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.80 | 62.0 | 5.89e-01 | 80.7% | 74.7% |
| 3504306 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.79 | 56.0 | 5.13e-01 | 75.9% | 58.1% |
| 5060252 | 632.23.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I | 0.76 | 57.0 | 5.71e-01 | 80.7% | 83.5% |
| 3634896 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.76 | 57.0 | 5.14e-01 | 80.7% | 61.7% |
| 4281985 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 58.0 | 4.85e-01 | 81.9% | 53.6% |
| 4946656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 55.0 | 4.86e-01 | 77.1% | 64.2% |
| 3249078 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.74 | 64.0 | 5.86e-01 | 96.4% | 90.0% |
| 3481029 | 109.4.1.1387 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dymeclin, Hid1 | 0.74 | 53.0 | 3.47e-01 | 74.7% | 34.7% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.73 | 50.0 | 5.14e-01 | 71.1% | 75.0% |
| 3346986 | 3711.1.1.4 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DOG1 | 0.73 | 57.0 | 4.21e-01 | 83.1% | 34.6% |
| 3420431 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.72 | 55.0 | 5.49e-01 | 81.9% | 84.7% |
| 5039649 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.72 | 54.0 | 4.78e-01 | 79.5% | 58.3% |
| 5046748 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.72 | 51.0 | 5.42e-01 | 73.5% | 87.1% |
| 4426191 | 101.1.3.26 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB | 0.72 | 54.0 | 4.27e-01 | 78.3% | 52.5% |
| 3808173 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.70 | 54.0 | 5.59e-01 | 83.1% | 93.3% |
| 3279432 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.67 | 49.0 | 4.49e-01 | 77.1% | 87.3% |
| 3998686 | 5050.1.1.6 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP | 0.66 | 59.0 | 4.14e-01 | 100.0% | 45.9% |
| 3924754 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.66 | 59.0 | 3.80e-01 | 97.6% | 33.4% |
| 3814771 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.63 | 45.0 | 4.54e-01 | 77.1% | 82.4% |
| 3216082 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 56.0 | 5.03e-01 | 98.8% | 87.0% |
| 3927235 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.61 | 46.0 | 4.92e-01 | 83.1% | 100.0% |
| 4456370 | 5086.1.1.99 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ApoL | 0.57 | 40.0 | 3.92e-01 | 72.3% | 88.9% |
| 3389546 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 44.0 | 4.47e-01 | 80.7% | 91.3% |
| 4017135 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.54 | 41.0 | 3.96e-01 | 81.9% | 80.0% |
| 4118286 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.53 | 37.0 | 3.71e-01 | 72.3% | 75.3% |
| 4275352 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.53 | 37.0 | 3.56e-01 | 72.3% | 67.4% |