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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00409
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00409
Identity
- Kingdom:
- phage
Quality
49.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-122
D2
high
residues 166-247
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.73 | 60.0 | 5.96e-01 | 87.8% | 88.1% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.58 | 45.0 | 4.44e-01 | 84.1% | 83.7% |
| 2js9A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.57 | 32.0 | 3.26e-01 | 78.0% | 53.1% |
| 4ix7A00 | 1.10.10.2590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain | 0.52 | 38.0 | 3.37e-01 | 75.6% | 61.4% |
| 1yoeA00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.51 | 42.0 | 2.91e-01 | 92.7% | 50.3% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.51 | 38.0 | 3.44e-01 | 79.3% | 76.3% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.51 | 31.0 | 3.62e-01 | 80.5% | 86.4% |
| 1vt0k00 | 1.10.3230.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) | 0.51 | 44.0 | 3.73e-01 | 100.0% | 66.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3856774 | 110.1.1.18 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 | 0.57 | 39.0 | 3.16e-01 | 74.4% | 37.3% |
| 3210826 | 2485.1.1.67 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GILT | 0.55 | 44.0 | 3.26e-01 | 86.6% | 49.5% |
| 4972168 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.55 | 42.0 | 3.75e-01 | 80.5% | 86.1% |
| 3342961 | 4974.1.1.1 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain › DUF4378 | 0.55 | 45.0 | 3.80e-01 | 86.6% | 88.5% |
| 3959144 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.84e-01 | 82.9% | 84.0% |
| 4025067 | 247.1.1.5 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C | 0.53 | 42.0 | 2.99e-01 | 91.5% | 35.2% |
| 3369062 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.52 | 33.0 | 3.17e-01 | 82.9% | 53.7% |
| 3726085 | 101.1.2.127 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 | 0.52 | 32.0 | 3.23e-01 | 74.4% | 60.0% |
| 3412515 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.52 | 46.0 | 2.83e-01 | 98.8% | 85.9% |
| 5073588 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.50 | 40.0 | 2.96e-01 | 92.7% | 51.2% |
| 3801602 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.50 | 44.0 | 2.85e-01 | 100.0% | 49.2% |