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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00483
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00483
Identity
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-76
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sxjE03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.74 | 59.0 | 5.11e-01 | 86.2% | 58.8% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.67 | 51.0 | 3.65e-01 | 84.6% | 82.7% |
| 4g1tA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 44.0 | 4.57e-01 | 73.8% | 73.8% |
| 4malA00 | 1.20.58.2200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 44.0 | 4.57e-01 | 73.8% | 78.0% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.64 | 48.0 | 4.40e-01 | 80.0% | 70.9% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.63 | 43.0 | 4.50e-01 | 70.8% | 87.7% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.62 | 49.0 | 4.45e-01 | 87.7% | 78.0% |
| 2pbiA02 | 1.10.1240.60 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.62 | 49.0 | 4.35e-01 | 90.8% | 58.4% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 49.0 | 4.33e-01 | 90.8% | 90.1% |
| 2es9A00 | 1.20.1290.30 | Mainly Alpha › Up-down Bundle › AhpD-like › | 0.62 | 47.0 | 4.18e-01 | 86.2% | 57.0% |
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 42.0 | 4.63e-01 | 76.9% | 94.1% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.60 | 48.0 | 3.53e-01 | 93.8% | 30.6% |
| 3gz1A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 43.0 | 3.36e-01 | 76.9% | 34.7% |
| 2nq2A00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.60 | 45.0 | 3.00e-01 | 86.2% | 66.2% |
| 1jwjA01 | 3.90.340.10 | Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 | 0.58 | 43.0 | 3.14e-01 | 78.5% | 65.1% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 45.0 | 3.67e-01 | 87.7% | 89.8% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.56 | 45.0 | 3.49e-01 | 89.2% | 76.8% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 42.0 | 3.75e-01 | 84.6% | 55.6% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.55 | 42.0 | 3.97e-01 | 84.6% | 72.0% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.55 | 46.0 | 3.64e-01 | 100.0% | 60.9% |
| 3q15B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 46.0 | 2.97e-01 | 98.5% | 72.6% |
| 1q90D02 | 1.10.287.980 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › plastocyanin oxidoreductase | 0.54 | 38.0 | 3.47e-01 | 76.9% | 75.3% |
| 7qaqA01 | 3.40.50.11710 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase | 0.54 | 45.0 | 3.23e-01 | 98.5% | 41.3% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3617250 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.75 | 55.0 | 4.96e-01 | 78.5% | 56.7% |
| 3591733 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 56.0 | 4.38e-01 | 83.1% | 96.4% |
| 1559081 | 109.2.1.24 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › TED_complement | 0.71 | 53.0 | 3.46e-01 | 78.5% | 23.5% |
| 3404548 | 138.1.1.11 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC_C | 0.71 | 59.0 | 5.06e-01 | 92.3% | 99.0% |
| 5009863 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.68 | 54.0 | 4.64e-01 | 89.2% | 61.1% |
| 3553517 | 109.2.1.4 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Cobalamin_bind | 0.68 | 55.0 | 3.59e-01 | 90.8% | 85.1% |
| 3517258 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 48.0 | 3.89e-01 | 76.9% | 46.7% |
| 2875228 | 138.1.1.0 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain | 0.65 | 54.0 | 4.71e-01 | 93.8% | 99.0% |
| 5016721 | 6132.1.1.14 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › PF29261 | 0.62 | 47.0 | 4.81e-01 | 84.6% | 96.7% |
| 4061283 | 4030.1.1.0 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz | 0.61 | 40.0 | 4.35e-01 | 80.0% | 88.0% |
| 3740643 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.61 | 47.0 | 3.69e-01 | 87.7% | 64.7% |
| 3600444 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.59 | 44.0 | 3.52e-01 | 84.6% | 42.8% |
| 3317025 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 44.0 | 3.40e-01 | 89.2% | 76.1% |
| 3258406 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 44.0 | 2.58e-01 | 89.2% | 14.2% |
| 3988430 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.55 | 40.0 | 3.65e-01 | 81.5% | 90.5% |
| 4513921 | 101.7.1.1 ↗ | alpha arrays › HTH › DEK-C › DEK-C › DEK_C | 0.55 | 42.0 | 4.31e-01 | 86.2% | 100.0% |
| 4965039 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.54 | 48.0 | 3.24e-01 | 100.0% | 66.5% |
| 3591262 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.54 | 40.0 | 4.09e-01 | 86.2% | 84.6% |
| 3464621 | 2484.1.1.131 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_21 | 0.53 | 43.0 | 2.80e-01 | 92.3% | 54.5% |