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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00541
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00541
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-57
D2
high
residues 65-146
Domain cluster:
rep: S20_GE20_scaffold_13766_prodigal-single.1__X__X__00119__D72-147
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA04 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.71 | 62.0 | 5.47e-01 | 95.1% | 67.5% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.67 | 49.0 | 4.26e-01 | 78.0% | 78.9% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.67 | 59.0 | 5.86e-01 | 97.6% | 93.0% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.65 | 49.0 | 3.93e-01 | 80.5% | 78.8% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.64 | 53.0 | 4.28e-01 | 93.9% | 89.8% |
| 4paaA03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.63 | 57.0 | 4.36e-01 | 100.0% | 43.9% |
| 1pj5A03 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.63 | 57.0 | 4.27e-01 | 100.0% | 42.4% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.63 | 56.0 | 3.66e-01 | 100.0% | 22.5% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.63 | 54.0 | 4.44e-01 | 95.1% | 86.5% |
| 2dkhA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.62 | 49.0 | 4.41e-01 | 96.3% | 61.4% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.62 | 52.0 | 4.16e-01 | 95.1% | 89.7% |
| 1d1jB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.61 | 46.0 | 3.88e-01 | 79.3% | 76.5% |
| 2hzmG01 | 3.30.310.180 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.61 | 53.0 | 4.76e-01 | 96.3% | 76.5% |
| 1yr2A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.60 | 41.0 | 2.74e-01 | 70.7% | 48.0% |
| 3dpuB03 | 3.30.310.200 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.59 | 51.0 | 4.75e-01 | 98.8% | 83.3% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 43.0 | 3.64e-01 | 75.6% | 83.7% |
| 3w9kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.59 | 49.0 | 4.17e-01 | 91.5% | 83.7% |
| 2avtA02 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.59 | 42.0 | 3.18e-01 | 75.6% | 77.4% |
| 4u6bA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.59 | 42.0 | 2.85e-01 | 76.8% | 89.5% |
| 2j7qA00 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.59 | 41.0 | 3.01e-01 | 74.4% | 74.5% |
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.57 | 48.0 | 4.34e-01 | 95.1% | 75.0% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 40.0 | 2.74e-01 | 78.0% | 87.3% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 42.0 | 3.53e-01 | 80.5% | 80.1% |
| 2qzuA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.55 | 38.0 | 3.85e-01 | 72.0% | 100.0% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.55 | 47.0 | 4.57e-01 | 97.6% | 88.3% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 45.0 | 3.31e-01 | 95.1% | 76.7% |
| 1mpgA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.54 | 46.0 | 4.15e-01 | 93.9% | 75.9% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 46.0 | 4.56e-01 | 97.6% | 100.0% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 45.0 | 3.89e-01 | 95.1% | 97.8% |
| 3nvoA01 | 3.30.460.20 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like | 0.54 | 46.0 | 3.92e-01 | 93.9% | 90.1% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.54 | 40.0 | 3.41e-01 | 79.3% | 50.4% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.53 | 45.0 | 3.85e-01 | 96.3% | 100.0% |
| 3v39A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 46.0 | 3.35e-01 | 97.6% | 44.8% |
| 2mqdA00 | 3.30.1460.60 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 40.0 | 3.52e-01 | 80.5% | 66.4% |
| 2jhnA01 | 3.30.310.20 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain | 0.53 | 43.0 | 3.99e-01 | 95.1% | 99.1% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 38.0 | 3.78e-01 | 78.0% | 90.9% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.66e-01 | 79.3% | 92.8% |
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.52 | 40.0 | 3.83e-01 | 85.4% | 100.0% |
| 2o62A01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.48e-01 | 84.1% | 90.1% |
| 1o07A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 39.0 | 2.61e-01 | 81.7% | 91.5% |
| 1ealA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 38.0 | 3.31e-01 | 79.3% | 93.7% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.57e-01 | 81.7% | 91.0% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 38.0 | 3.56e-01 | 80.5% | 69.5% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.51 | 38.0 | 3.36e-01 | 79.3% | 85.0% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 42.0 | 2.96e-01 | 98.8% | 57.1% |
ECOD (65)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2068824 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.69 | 63.0 | 4.21e-01 | 100.0% | 27.7% |
| 4946177 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.68 | 57.0 | 4.48e-01 | 92.7% | 87.4% |
| 4966080 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.67 | 49.0 | 4.02e-01 | 78.0% | 85.2% |
| 3252765 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.67 | 48.0 | 4.09e-01 | 75.6% | 74.1% |
| 3222106 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.66 | 48.0 | 4.30e-01 | 78.0% | 77.5% |
| 3236988 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.65 | 57.0 | 5.76e-01 | 100.0% | 100.0% |
| 4033134 | 3264.1.1.0 ↗ | 0.64 | 52.0 | 4.35e-01 | 91.5% | 64.7% | |
| 5004346 | 331.19.1.0 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains | 0.64 | 45.0 | 4.50e-01 | 74.4% | 80.0% |
| 3743129 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.64 | 45.0 | 4.19e-01 | 74.4% | 80.0% |
| 2557239 | 223.2.1.17 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › SLM4 | 0.64 | 48.0 | 3.97e-01 | 80.5% | 71.9% |
| 3603228 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 51.0 | 4.95e-01 | 93.9% | 77.9% |
| 2665337 | 3264.1.1.0 ↗ | 0.63 | 51.0 | 4.11e-01 | 87.8% | 59.0% | |
| 7054 | 881.2.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like › DUF3242 | 0.63 | 47.0 | 4.13e-01 | 80.5% | 99.2% |
| 4033840 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.62 | 54.0 | 4.21e-01 | 100.0% | 90.0% |
| 4962132 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.62 | 46.0 | 3.79e-01 | 80.5% | 84.4% |
| 3468562 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.62 | 55.0 | 5.35e-01 | 100.0% | 100.0% |
| 3388732 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.62 | 51.0 | 5.12e-01 | 92.7% | 96.5% |
| None | — | 0.62 | 53.0 | 3.39e-01 | 96.3% | 61.2% | |
| 5049183 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 54.0 | 4.82e-01 | 100.0% | 80.5% |
| 5045322 | 331.6.1.0 ↗ | a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain | 0.61 | 53.0 | 4.66e-01 | 100.0% | 84.0% |
| 4930594 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.60 | 49.0 | 5.07e-01 | 95.1% | 100.0% |
| 4975637 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.59 | 41.0 | 4.20e-01 | 72.0% | 92.5% |
| 3953024 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 49.0 | 4.45e-01 | 93.9% | 68.7% |
| 3598831 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 51.0 | 4.83e-01 | 97.6% | 82.0% |
| 1066273 | 331.3.1.12 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like | 0.59 | 49.0 | 4.17e-01 | 91.5% | 83.7% |
| 4960403 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.59 | 50.0 | 4.86e-01 | 92.7% | 100.0% |
| 3823427 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.59 | 49.0 | 4.29e-01 | 92.7% | 67.2% |
| 3953302 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.59 | 47.0 | 4.41e-01 | 89.0% | 94.2% |
| 3392728 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.58 | 51.0 | 4.48e-01 | 100.0% | 80.0% |
| 4955776 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.58 | 44.0 | 3.72e-01 | 82.9% | 100.0% |
| 3989333 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.58 | 34.0 | 3.94e-01 | 80.5% | 81.7% |
| 3710489 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.58 | 50.0 | 4.67e-01 | 98.8% | 79.0% |
| 3955906 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.58 | 50.0 | 4.97e-01 | 97.6% | 100.0% |
| 3483806 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.58 | 41.0 | 3.42e-01 | 75.6% | 86.7% |
| 4018561 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.57 | 42.0 | 3.54e-01 | 79.3% | 75.2% |
| 5014159 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 45.0 | 3.97e-01 | 87.8% | 91.2% |
| 3929349 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 49.0 | 3.76e-01 | 100.0% | 40.5% |
| 5055761 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.56 | 40.0 | 3.36e-01 | 73.2% | 88.6% |
| 4995617 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.56 | 48.0 | 4.72e-01 | 97.6% | 100.0% |
| 4973640 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 47.0 | 4.62e-01 | 93.9% | 98.9% |
| 3588455 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.56 | 35.0 | 3.81e-01 | 80.5% | 75.7% |
| 5075970 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.56 | 47.0 | 4.64e-01 | 95.1% | 100.0% |
| 4436049 | 1190.1.1.1 ↗ | a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF | 0.56 | 37.0 | 3.46e-01 | 80.5% | 56.0% |
| 3512817 | 304.107.1.10 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf | 0.55 | 48.0 | 4.25e-01 | 100.0% | 68.8% |
| 5033617 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 39.0 | 3.43e-01 | 75.6% | 66.4% |
| 3960286 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.55 | 44.0 | 4.40e-01 | 91.5% | 98.8% |
| 3496493 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.55 | 47.0 | 3.76e-01 | 100.0% | 97.2% |
| 3647550 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.55 | 41.0 | 4.11e-01 | 81.7% | 84.7% |
| 3280283 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.55 | 39.0 | 2.65e-01 | 78.0% | 85.9% |
| 3710275 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.55 | 47.0 | 3.47e-01 | 100.0% | 35.4% |
| 3972580 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.54 | 43.0 | 4.44e-01 | 87.8% | 98.8% |
| 6297 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.54 | 46.0 | 4.33e-01 | 93.9% | 85.9% |
| 5010092 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 40.0 | 3.66e-01 | 80.5% | 78.3% |
| 3209971 | 604.1.1.135 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF155 | 0.54 | 46.0 | 3.17e-01 | 96.3% | 28.5% |
| 4136892 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.54 | 42.0 | 4.25e-01 | 86.6% | 100.0% |
| 4960622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.75e-01 | 78.0% | 66.3% |
| 1348622 | 6150.1.1.1 ↗ | a+b two layers › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › hypotheical protein Lreu_0056 › Lreu_0056_like | 0.53 | 40.0 | 3.52e-01 | 80.5% | 66.4% |
| 4042507 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.52 | 43.0 | 2.95e-01 | 97.6% | 59.7% |
| 3973446 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.52 | 38.0 | 2.91e-01 | 80.5% | 86.4% |
| 2552758 | 9.1.1.24 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 | 0.51 | 38.0 | 3.23e-01 | 79.3% | 87.6% |
| 4538067 | 244.2.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Rbx_binding | 0.51 | 34.0 | 3.83e-01 | 89.0% | 93.3% |
| 3672898 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.51 | 35.0 | 3.08e-01 | 72.0% | 69.6% |
| 3029678 | 244.1.1.5 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 | 0.51 | 44.0 | 4.18e-01 | 100.0% | 82.7% |
| 5791 | 295.1.1.6 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 | 0.51 | 38.0 | 3.36e-01 | 79.3% | 85.7% |
| 3733356 | 298.1.1.25 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C | 0.50 | 38.0 | 3.07e-01 | 81.7% | 84.2% |
D3
high
residues 150-301
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 42.3 | 1.40e-10 | 69.1% | 97.0% |
| PF00910.29 | RNA_helicase | 23.8 | 7.40e-05 | 59.9% | 67.6% |
D4
high
residues 307-371
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.67 | 54.0 | 4.06e-01 | 86.2% | 37.7% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.66 | 45.0 | 4.34e-01 | 72.3% | 89.5% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 48.0 | 3.68e-01 | 80.0% | 94.8% |
| 2bl2A00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.62 | 48.0 | 3.73e-01 | 86.2% | 67.3% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.62 | 56.0 | 4.51e-01 | 100.0% | 54.9% |
| 6ko8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 51.0 | 3.68e-01 | 93.8% | 70.8% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 50.0 | 4.46e-01 | 98.5% | 90.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5075878 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.67 | 52.0 | 4.84e-01 | 83.1% | 96.2% |
| 3939049 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 46.0 | 4.72e-01 | 73.8% | 86.7% |
| 4077186 | 632.15.1.4 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 | 0.65 | 52.0 | 4.78e-01 | 86.2% | 90.6% |
| 5005610 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.64 | 46.0 | 4.07e-01 | 78.5% | 76.8% |
| 3875394 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.63 | 54.0 | 3.59e-01 | 95.4% | 65.1% |
| 3542409 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.60 | 45.0 | 4.20e-01 | 83.1% | 65.9% |