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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00630

Bact-Vir

SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00630

Identity

Kingdom:
phage

Quality

65.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-66
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.74 58.0 5.74e-01 86.7% 85.9%
2olsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.71 63.0 4.78e-01 100.0% 65.0%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.71 48.0 3.67e-01 70.0% 34.5%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.70 61.0 5.01e-01 100.0% 83.2%
4dkwA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.70 61.0 4.30e-01 100.0% 82.0%
2wbnA00 3.30.420.280 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.70 60.0 4.37e-01 100.0% 87.1%
1ufhA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 60.0 4.52e-01 100.0% 41.3%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.70 63.0 4.46e-01 100.0% 49.2%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.70 60.0 4.95e-01 100.0% 83.2%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.70 60.0 4.98e-01 100.0% 82.7%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.70 60.0 5.02e-01 100.0% 84.3%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.69 60.0 4.92e-01 100.0% 80.5%
3kd9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 60.0 3.97e-01 100.0% 36.5%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.67 53.0 5.39e-01 91.7% 94.7%
4a2bA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 57.0 4.41e-01 100.0% 100.0%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.66 40.0 2.93e-01 100.0% 23.6%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 56.0 4.09e-01 100.0% 81.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.65 49.0 4.83e-01 85.0% 81.5%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 54.0 4.03e-01 95.0% 98.1%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.65 48.0 3.82e-01 80.0% 40.7%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 55.0 4.49e-01 100.0% 54.2%
3gldA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 45.0 3.45e-01 76.7% 41.3%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.62 46.0 3.95e-01 80.0% 59.2%
3vrdB03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.61 41.0 3.89e-01 70.0% 62.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.61 45.0 3.36e-01 80.0% 38.5%
2z5bB01 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 51.0 4.19e-01 98.3% 100.0%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.60 48.0 3.86e-01 93.3% 99.2%
3bdiA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 46.0 3.28e-01 90.0% 47.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.59 42.0 3.52e-01 75.0% 43.3%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 51.0 4.11e-01 100.0% 90.8%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.57 50.0 3.35e-01 100.0% 79.3%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 40.0 2.57e-01 78.3% 56.7%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 50.0 3.06e-01 100.0% 89.8%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.57 47.0 3.45e-01 100.0% 83.3%
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.33e-01 81.7% 38.5%
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.08e-01 100.0% 89.0%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.54 47.0 3.17e-01 100.0% 75.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.54 48.0 3.23e-01 100.0% 76.7%
1zghA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.54 44.0 3.23e-01 90.0% 57.0%
4k6lG00 3.90.210.10 Alpha Beta › Alpha-Beta Complex › Heat-Labile Enterotoxin; Chain A › Heat-Labile Enterotoxin, subunit A 0.54 47.0 3.22e-01 100.0% 53.6%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.49e-01 76.7% 58.1%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 47.0 3.00e-01 100.0% 86.5%
2ch9A01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.74e-01 100.0% 85.0%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.75e-01 100.0% 90.7%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 47.0 4.32e-01 96.7% 94.7%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 42.0 3.44e-01 98.3% 75.0%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 44.0 3.54e-01 100.0% 68.8%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 42.0 3.36e-01 100.0% 91.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3998607 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.80 54.0 4.06e-01 70.0% 56.1%
3240178 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.78 54.0 4.01e-01 71.7% 55.7%
3487306 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.76 53.0 3.90e-01 73.3% 51.0%
3933593 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.73 53.0 3.95e-01 76.7% 74.7%
None — 0.71 61.0 5.07e-01 100.0% 64.0%
4408649 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.71 61.0 4.14e-01 98.3% 83.1%
4959338 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.70 63.0 4.42e-01 100.0% 95.7%
3614126 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.70 60.0 4.14e-01 96.7% 39.7%
134144 2484.1.1.76 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.70 60.0 4.37e-01 100.0% 87.1%
4579381 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.69 59.0 4.39e-01 98.3% 98.1%
2623870 2484.1.1.44 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.69 59.0 4.48e-01 98.3% 99.3%
3596002 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 46.0 3.58e-01 70.0% 37.7%
4797813 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.67 53.0 5.39e-01 91.7% 94.7%
5045287 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.67 57.0 4.57e-01 100.0% 73.6%
3408695 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.66 55.0 4.86e-01 100.0% 75.8%
4345467 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.63 48.0 2.87e-01 83.3% 14.1%
5019252 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.63 48.0 2.82e-01 83.3% 12.6%
3927366 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.63 55.0 4.06e-01 95.0% 91.3%
3929202 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.63 50.0 4.15e-01 86.7% 92.4%
5079440 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 55.0 3.84e-01 100.0% 65.6%
3625247 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.61 45.0 3.77e-01 81.7% 60.9%
3927742 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.61 55.0 3.46e-01 100.0% 96.2%
3940017 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.60 55.0 3.47e-01 100.0% 93.1%
3960733 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.60 40.0 3.65e-01 70.0% 62.4%
3752441 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 50.0 4.12e-01 98.3% 58.3%
5073891 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.59 49.0 4.32e-01 100.0% 65.0%
3937984 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 39.0 3.36e-01 75.0% 42.0%
3605618 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 3.44e-01 88.3% 97.4%
3342794 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.58 46.0 4.11e-01 90.0% 90.0%
5028275 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.58 47.0 3.03e-01 98.3% 72.2%
3592232 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 51.0 3.26e-01 100.0% 70.7%
4265072 9.1.1.68 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PF29184 0.57 48.0 3.93e-01 95.0% 90.4%
3812517 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.56 50.0 3.77e-01 100.0% 90.3%
3718117 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.56 49.0 3.19e-01 100.0% 72.7%
3454355 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.56 48.0 3.10e-01 100.0% 27.0%
5041843 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 49.0 3.39e-01 100.0% 82.0%
4114495 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 49.0 3.34e-01 100.0% 76.7%
5049460 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.55 49.0 3.22e-01 100.0% 75.5%
4950140 9.1.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META 0.55 47.0 3.90e-01 100.0% 59.1%
3843423 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.55 49.0 3.81e-01 100.0% 90.0%
4944954 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 48.0 3.28e-01 100.0% 80.5%
5078933 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.54 47.0 3.26e-01 100.0% 78.6%
3918435 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 49.0 3.10e-01 100.0% 73.6%
4142339 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.53 45.0 3.56e-01 100.0% 47.1%
3561019 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.53 47.0 3.69e-01 100.0% 88.5%
3940409 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 42.0 2.51e-01 88.3% 18.8%
4124957 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 45.0 3.14e-01 100.0% 77.7%
4416209 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 45.0 3.06e-01 100.0% 72.8%
4524129 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 39.0 3.45e-01 83.3% 60.0%
3763650 5.1.4.276 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd 0.52 41.0 2.68e-01 96.7% 33.4%
5070100 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.52 45.0 3.05e-01 100.0% 77.3%
3688114 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.51 44.0 2.63e-01 100.0% 21.8%
3700841 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 3.09e-01 100.0% 33.8%