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SR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00637
Bact-VirSR-VP_4-6_scaffold_141_2630357_prodigal-single.1__X__X__00637
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-112
Domain cluster:
rep: aot2015-NO19_SRR1761693_USA_trim_clean_trim_clean_scaffold_5_curated_closed_complete_reversed_prodigal-single.1__X__X__00183__D36-131
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00717.29 best | Peptidase_S24 | 27.5 | 2.90e-06 | 74.1% | 54.3% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1b12C01 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.89 | 70.0 | 6.70e-01 | 81.5% | 100.0% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.81 | 63.0 | 6.31e-01 | 80.6% | 81.5% |
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.80 | 63.0 | 6.57e-01 | 81.5% | 93.1% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.77 | 66.0 | 6.34e-01 | 89.8% | 98.3% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 49.0 | 5.87e-01 | 90.7% | 98.6% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.74 | 62.0 | 5.95e-01 | 89.8% | 94.4% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 40.0 | 5.17e-01 | 88.9% | 96.9% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.68 | 56.0 | 5.53e-01 | 89.8% | 81.4% |
| 3a2yA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.65 | 49.0 | 4.11e-01 | 79.6% | 75.7% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.64 | 47.0 | 4.46e-01 | 76.9% | 95.4% |
| 2vobB02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.64 | 48.0 | 3.83e-01 | 78.7% | 63.6% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 47.0 | 4.31e-01 | 77.8% | 87.2% |
| 3b79A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.63 | 45.0 | 4.38e-01 | 75.9% | 96.8% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 46.0 | 4.40e-01 | 79.6% | 83.2% |
| 4k8wA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.59 | 49.0 | 4.74e-01 | 87.0% | 94.9% |
| 4xcmA02 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.58 | 43.0 | 4.15e-01 | 77.8% | 76.4% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 46.0 | 4.73e-01 | 86.1% | 93.1% |
| 4n4iA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.13e-01 | 71.3% | 93.3% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 33.0 | 3.46e-01 | 80.6% | 66.0% |
| 1vq8Q00 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.52 | 37.0 | 3.96e-01 | 92.6% | 87.4% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 39.0 | 2.83e-01 | 82.4% | 96.1% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3290509 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.95 | 77.0 | 8.41e-01 | 84.3% | 100.0% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.92 | 72.0 | 7.85e-01 | 80.6% | 98.9% |
| 5006274 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.91 | 72.0 | 6.49e-01 | 81.5% | 66.4% |
| 4565837 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.91 | 71.0 | 7.61e-01 | 80.6% | 100.0% |
| 4999430 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.90 | 80.0 | 7.64e-01 | 91.7% | 84.2% |
| 1323508 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.90 | 72.0 | 6.48e-01 | 82.4% | 97.1% |
| 5066224 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.89 | 67.0 | 7.40e-01 | 77.8% | 100.0% |
| 5055039 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.89 | 73.0 | 6.54e-01 | 84.3% | 76.4% |
| 5067286 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.89 | 68.0 | 7.45e-01 | 78.7% | 97.8% |
| 4938445 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.89 | 72.0 | 6.59e-01 | 84.3% | 74.1% |
| 4958339 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.89 | 71.0 | 7.11e-01 | 83.3% | 89.1% |
| 3266698 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.88 | 72.0 | 6.57e-01 | 84.3% | 85.9% |
| 4032535 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.88 | 73.0 | 6.19e-01 | 86.1% | 91.5% |
| 4956630 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.88 | 72.0 | 6.22e-01 | 84.3% | 71.0% |
| 4937121 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.88 | 72.0 | 7.00e-01 | 84.3% | 86.1% |
| 5037939 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.88 | 72.0 | 6.25e-01 | 85.2% | 70.3% |
| 3989651 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.87 | 73.0 | 5.77e-01 | 87.0% | 91.5% |
| 4937389 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.86 | 73.0 | 7.24e-01 | 87.0% | 88.2% |
| 3549321 | 4.11.1.5 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 | 0.86 | 71.0 | 6.08e-01 | 85.2% | 70.0% |
| None | — | 0.86 | 71.0 | 5.92e-01 | 85.2% | 95.9% | |
| 3715285 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.86 | 70.0 | 6.03e-01 | 84.3% | 69.7% |
| 3615426 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.85 | 69.0 | 6.09e-01 | 84.3% | 73.3% |
| 3587337 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.85 | 68.0 | 6.02e-01 | 83.3% | 63.3% |
| 5054196 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.85 | 70.0 | 6.14e-01 | 85.2% | 84.7% |
| 4943011 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.84 | 69.0 | 7.35e-01 | 84.3% | 98.9% |
| 4259069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.84 | 65.0 | 5.15e-01 | 80.6% | 46.0% |
| 4646593 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.82 | 70.0 | 6.42e-01 | 89.8% | 89.6% |
| 4007999 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.81 | 70.0 | 6.39e-01 | 89.8% | 88.9% |
| 4321173 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.80 | 43.0 | 5.79e-01 | 80.6% | 100.0% |
| 4191690 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.78 | 42.0 | 5.69e-01 | 81.5% | 100.0% |
| 4084190 | 4.1.1.98 ↗ | beta barrels › SH3 › SH3 › SH3 › ProQ_C | 0.78 | 42.0 | 5.66e-01 | 81.5% | 98.3% |
| 3963760 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.77 | 66.0 | 5.91e-01 | 89.8% | 88.8% |
| 3852545 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 43.0 | 5.70e-01 | 79.6% | 100.0% |
| 3518844 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 48.0 | 5.37e-01 | 90.7% | 83.5% |
| 3907619 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 49.0 | 5.42e-01 | 88.9% | 84.7% |
| 3881119 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 45.0 | 5.19e-01 | 88.9% | 82.5% |
| 3230083 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.73 | 48.0 | 5.18e-01 | 91.7% | 78.9% |
| 3389169 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.73 | 48.0 | 5.35e-01 | 90.7% | 84.7% |
| 3768094 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.73 | 48.0 | 4.93e-01 | 88.9% | 69.5% |
| 3765289 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.72 | 48.0 | 5.17e-01 | 90.7% | 81.1% |
| 4261492 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.69 | 51.0 | 4.77e-01 | 77.8% | 87.4% |
| 3782293 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.66 | 34.0 | 4.64e-01 | 75.9% | 98.2% |
| 3547084 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.66 | 45.0 | 4.87e-01 | 74.1% | 84.4% |
| 4405252 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.61 | 45.0 | 4.18e-01 | 77.8% | 90.0% |
| 3508415 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 48.0 | 4.53e-01 | 88.9% | 94.6% |
| 3688068 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.56 | 44.0 | 3.96e-01 | 83.3% | 100.0% |
| 1408049 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.56 | 44.0 | 4.05e-01 | 82.4% | 91.9% |
| 3302817 | 4.1.1.362 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2, KOW7_SPT5 | 0.56 | 46.0 | 4.62e-01 | 88.0% | 98.2% |
| 3498280 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 42.0 | 3.96e-01 | 79.6% | 90.8% |
| 3492982 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.55 | 42.0 | 3.91e-01 | 80.6% | 88.1% |
| 3651964 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.53 | 48.0 | 4.69e-01 | 98.1% | 97.5% |
| 3576940 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 43.0 | 3.36e-01 | 85.2% | 49.3% |
| 3520654 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.50 | 46.0 | 4.11e-01 | 100.0% | 82.0% |