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SR-VP_4-6_scaffold_141_3113143_prodigal-single.1__X__X__00080
Bact-VirSR-VP_4-6_scaffold_141_3113143_prodigal-single.1__X__X__00080
Identity
- Kingdom:
- phage
Quality
61.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-119
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 39.0 | 3.60e-01 | 98.4% | 47.4% |
| 3l0iA01 | 1.20.120.1520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 49.0 | 3.56e-01 | 90.2% | 30.1% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.61 | 49.0 | 3.89e-01 | 91.8% | 94.8% |
| 1ls1A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 50.0 | 4.43e-01 | 91.8% | 100.0% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 37.0 | 4.29e-01 | 82.0% | 88.4% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 43.0 | 4.23e-01 | 91.8% | 70.8% |
| 2q1kA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.60 | 40.0 | 4.22e-01 | 75.4% | 80.8% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.60 | 49.0 | 3.83e-01 | 98.4% | 41.8% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.59 | 47.0 | 4.01e-01 | 90.2% | 52.3% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.58 | 49.0 | 4.54e-01 | 100.0% | 73.4% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.46e-01 | 90.2% | 45.1% |
| 4aflA00 | 6.10.140.1740 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 39.0 | 3.36e-01 | 75.4% | 44.1% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.18e-01 | 96.7% | 71.3% |
| 2qdjA03 | 1.10.472.140 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.55 | 47.0 | 3.89e-01 | 100.0% | 53.4% |
| 6qssB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.55 | 48.0 | 3.59e-01 | 100.0% | 45.1% |
| 3i5qA02 | 1.10.167.20 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.54 | 42.0 | 3.96e-01 | 91.8% | 87.7% |
| 2yevC00 | 6.10.280.110 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 41.0 | 4.06e-01 | 82.0% | 79.4% |
| 2h4pA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.53 | 44.0 | 3.04e-01 | 100.0% | 65.3% |
| 2ou3A01 | 1.10.3680.10 | Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like | 0.53 | 45.0 | 3.43e-01 | 100.0% | 39.6% |
| 4e21B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 44.0 | 3.51e-01 | 100.0% | 75.9% |
| 6cgaC02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.47e-01 | 75.4% | 67.9% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 35.0 | 3.66e-01 | 75.4% | 77.2% |
| 7ce1A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 41.0 | 4.38e-01 | 91.8% | 100.0% |
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.51 | 35.0 | 3.65e-01 | 75.4% | 84.2% |
| 4gtnA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.50 | 37.0 | 3.46e-01 | 82.0% | 63.5% |
| 1imvA02 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.50 | 41.0 | 3.00e-01 | 100.0% | 41.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3606849 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.69 | 52.0 | 4.39e-01 | 80.3% | 66.0% |
| 4230219 | 3877.1.1.1 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP | 0.66 | 59.0 | 3.89e-01 | 100.0% | 53.7% |
| 3834278 | 4133.1.1.1 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT | 0.64 | 51.0 | 4.99e-01 | 96.7% | 81.5% |
| 3632068 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.60 | 40.0 | 4.03e-01 | 82.0% | 68.3% |
| 3687243 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 4.52e-01 | 90.2% | 90.0% |
| 3985619 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.56 | 45.0 | 2.99e-01 | 88.5% | 22.4% |
| 3688063 | 101.1.1.148 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › EPL1 | 0.55 | 46.0 | 3.97e-01 | 100.0% | 65.7% |
| 3640012 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 46.0 | 2.54e-01 | 93.4% | 8.1% |
| 3260673 | 131.1.1.3 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD | 0.54 | 45.0 | 3.19e-01 | 100.0% | 69.5% |
| 3726530 | 4095.1.1.0 ↗ | alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain | 0.54 | 46.0 | 3.76e-01 | 100.0% | 66.7% |
| 3687766 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 40.0 | 2.74e-01 | 82.0% | 22.7% |
| 3942983 | 101.1.4.8 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76 | 0.52 | 40.0 | 3.09e-01 | 85.2% | 38.0% |
| 3171200 | 4003.1.1.1 ↗ | alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › TACO1_YebC_N | 0.52 | 44.0 | 4.06e-01 | 100.0% | 71.8% |
| 3823703 | 212.1.1.22 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans | 0.51 | 37.0 | 2.58e-01 | 80.3% | 32.1% |
| 4797659 | 632.1.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid | 0.51 | 38.0 | 4.02e-01 | 80.3% | 94.5% |
| 3343871 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 40.0 | 2.91e-01 | 88.5% | 43.2% |
| 3875142 | 601.11.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain › Perilipin | 0.51 | 38.0 | 2.73e-01 | 88.5% | 64.3% |