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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00013
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00013
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-187
Domain cluster:
rep: MT028491.1__QIG66049.1__phiOC_p407__00383__D25-155
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 54.6 | 1.90e-14 | 81.5% | 82.9% |
| PF23474.2 | Acb1 | 33.5 | 4.60e-08 | 78.6% | 60.7% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 73.0 | 7.12e-01 | 92.9% | 88.5% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 69.0 | 6.91e-01 | 90.5% | 86.0% |
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 71.0 | 6.88e-01 | 90.5% | 88.0% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.80 | 69.0 | 6.63e-01 | 89.3% | 87.7% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.79 | 69.0 | 6.44e-01 | 91.7% | 89.3% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 67.0 | 6.75e-01 | 89.3% | 89.8% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 30.0 | 3.31e-01 | 91.1% | 70.8% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.85 | 73.0 | 7.19e-01 | 89.3% | 89.9% |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.85 | 73.0 | 7.05e-01 | 88.7% | 87.0% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 73.0 | 7.03e-01 | 89.3% | 86.5% |
| 4946449 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.84 | 73.0 | 7.00e-01 | 89.3% | 88.6% |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.84 | 73.0 | 7.00e-01 | 90.5% | 87.2% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 71.0 | 6.98e-01 | 88.7% | 88.9% |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 73.0 | 7.00e-01 | 90.5% | 87.0% |
| None | — | 0.83 | 71.0 | 7.16e-01 | 89.3% | 94.1% | |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 71.0 | 6.88e-01 | 89.3% | 86.5% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 71.0 | 6.86e-01 | 88.7% | 87.0% |
| None | — | 0.82 | 71.0 | 6.94e-01 | 89.3% | 89.4% | |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 71.0 | 6.98e-01 | 89.3% | 87.6% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 71.0 | 6.68e-01 | 89.3% | 86.2% |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 73.0 | 7.12e-01 | 92.9% | 88.5% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.82 | 71.0 | 6.67e-01 | 89.3% | 87.2% |
| 4948034 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 71.0 | 6.82e-01 | 89.3% | 87.6% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 73.0 | 7.06e-01 | 92.9% | 89.7% |
| 3698720 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.82 | 70.0 | 6.30e-01 | 89.3% | 79.4% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 72.0 | 6.92e-01 | 91.1% | 88.6% |
| None | — | 0.82 | 71.0 | 6.88e-01 | 90.5% | 88.0% | |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.82 | 70.0 | 6.61e-01 | 88.7% | 86.2% |
| 4025967 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.82 | 71.0 | 6.09e-01 | 90.5% | 91.6% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 70.0 | 6.72e-01 | 89.3% | 85.6% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 70.0 | 6.83e-01 | 89.3% | 89.4% |
| 5067404 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 71.0 | 6.85e-01 | 90.5% | 89.7% |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 70.0 | 6.85e-01 | 89.3% | 87.8% |
| 3982264 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 69.0 | 6.88e-01 | 90.5% | 85.6% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 69.0 | 6.71e-01 | 87.5% | 88.3% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 70.0 | 6.75e-01 | 89.3% | 87.0% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 70.0 | 6.76e-01 | 89.3% | 88.0% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 70.0 | 6.86e-01 | 90.5% | 90.0% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.81 | 69.0 | 6.73e-01 | 89.3% | 87.4% |
| 1953031 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 69.0 | 6.81e-01 | 90.5% | 85.1% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 69.0 | 6.80e-01 | 88.7% | 88.0% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 71.0 | 6.97e-01 | 92.3% | 88.3% |
| 4972305 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 69.0 | 6.79e-01 | 89.3% | 88.8% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 68.0 | 6.29e-01 | 89.3% | 85.6% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 67.0 | 6.54e-01 | 88.7% | 88.0% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 68.0 | 6.66e-01 | 89.3% | 87.2% |
| 4979619 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 68.0 | 6.83e-01 | 89.9% | 94.1% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 67.0 | 6.59e-01 | 88.7% | 87.8% |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 69.0 | 6.49e-01 | 91.7% | 89.5% |
| 4965442 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 64.0 | 6.61e-01 | 87.5% | 88.7% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 67.0 | 6.58e-01 | 89.3% | 87.2% |
| 3216833 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 67.0 | 6.10e-01 | 89.9% | 89.4% |
| 3412490 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 66.0 | 6.14e-01 | 88.1% | 86.3% |
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 66.0 | 6.15e-01 | 88.1% | 89.4% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 65.0 | 6.63e-01 | 89.9% | 89.7% |
| 3730050 | 264.1.1.5 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2H-phosphodiest | 0.77 | 66.0 | 5.88e-01 | 89.9% | 81.6% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 59.0 | 6.42e-01 | 79.2% | 100.0% |
| 1117634 | 264.1.1.8 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS,AKAP7_RIRII_bdg | 0.76 | 71.0 | 6.34e-01 | 99.4% | 87.8% |
| 3735878 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 65.0 | 6.14e-01 | 89.9% | 87.2% |
| 3483252 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.75 | 56.0 | 6.10e-01 | 76.2% | 100.0% |
| 3674751 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.75 | 69.0 | 6.26e-01 | 97.6% | 90.0% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.74 | 68.0 | 6.13e-01 | 97.0% | 89.1% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.74 | 68.0 | 6.33e-01 | 97.6% | 89.3% |
| 3205096 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.70 | 59.0 | 5.74e-01 | 89.3% | 88.6% |