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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00098
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00098
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-123
D2
high
residues 128-237
Domain cluster:
rep: MK448817.1__QBX21755.1__Javan59_0026__00034__D365-456
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jixB00 | 3.30.2010.10 | Alpha Beta › 2-Layer Sandwich › Zincin-like › "Metalloproteases (""zincins""), catalytic domain" | 0.78 | 50.0 | 5.20e-01 | 80.0% | 69.2% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.74 | 42.0 | 4.14e-01 | 76.4% | 52.1% |
| 1h19A02 | 3.30.2010.30 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.72 | 57.0 | 6.01e-01 | 95.5% | 96.9% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.68 | 58.0 | 4.98e-01 | 93.6% | 79.1% |
| 3pt3B00 | 3.30.2410.10 | Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic fold › Hect, E3 ligase catalytic domain | 0.67 | 54.0 | 5.70e-01 | 88.2% | 95.9% |
| 1bqbA01 | 3.10.170.10 | Alpha Beta › Roll › Elastase; domain 1 › | 0.66 | 58.0 | 5.25e-01 | 98.2% | 84.4% |
| 4ar9A01 | 3.40.30.160 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Collagenase ColT, N-terminal domain | 0.65 | 58.0 | 5.39e-01 | 100.0% | 88.0% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.63 | 34.0 | 4.27e-01 | 85.5% | 94.8% |
| 1tviA00 | 3.40.390.30 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › "Metalloproteases (""zincins""), catalytic domain" | 0.59 | 49.0 | 4.47e-01 | 92.7% | 75.3% |
| 3lucA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 50.0 | 4.81e-01 | 95.5% | 98.4% |
| 3lmcA00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.57 | 49.0 | 4.15e-01 | 96.4% | 100.0% |
| 3axbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 45.0 | 3.53e-01 | 91.8% | 87.5% |
| 3kkjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 47.0 | 4.22e-01 | 95.5% | 98.7% |
| 1mhxA00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 24.0 | 3.04e-01 | 87.3% | 69.2% |
| 3f5dA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.53 | 44.0 | 3.68e-01 | 90.9% | 85.0% |
| 6n39A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.71e-01 | 94.5% | 95.1% |
| 2ab0A00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 43.0 | 3.63e-01 | 90.9% | 87.7% |
| 3h78A02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 40.0 | 3.61e-01 | 83.6% | 69.7% |
| 2wmfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 3.12e-01 | 94.5% | 84.4% |
| 3tjrA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 41.0 | 3.19e-01 | 89.1% | 82.8% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838568 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.81 | 55.0 | 5.68e-01 | 82.7% | 73.3% |
| 3957469 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.77 | 55.0 | 4.88e-01 | 84.5% | 53.3% |
| 3386105 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.77 | 55.0 | 5.15e-01 | 84.5% | 61.5% |
| 5055672 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.77 | 55.0 | 5.66e-01 | 86.4% | 78.1% |
| 4942840 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.76 | 54.0 | 5.53e-01 | 82.7% | 77.1% |
| 4458442 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.74 | 60.0 | 6.09e-01 | 89.1% | 86.4% |
| 4959203 | 2498.1.1.160 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_MA_2 | 0.74 | 66.0 | 5.16e-01 | 100.0% | 46.0% |
| 3272315 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.74 | 68.0 | 5.73e-01 | 100.0% | 78.9% |
| 5027686 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.74 | 67.0 | 6.00e-01 | 99.1% | 80.0% |
| 5053447 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.72 | 56.0 | 5.45e-01 | 87.3% | 75.4% |
| 4025675 | 2498.1.1.62 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M76 | 0.72 | 59.0 | 4.88e-01 | 95.5% | 49.7% |
| 3983198 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.71 | 53.0 | 5.88e-01 | 80.0% | 100.0% |
| 3604193 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.70 | 51.0 | 4.70e-01 | 83.6% | 58.6% |
| 5057374 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 52.0 | 4.91e-01 | 96.4% | 65.2% |
| 4967466 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 49.0 | 5.03e-01 | 84.5% | 77.1% |
| 3962296 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.68 | 40.0 | 3.17e-01 | 72.7% | 27.8% |
| 3954373 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.67 | 40.0 | 2.92e-01 | 72.7% | 21.7% |
| 4304800 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.67 | 56.0 | 4.96e-01 | 91.8% | 83.0% |
| 3988332 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 57.0 | 5.38e-01 | 93.6% | 100.0% |
| 4951424 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.66 | 60.0 | 4.93e-01 | 99.1% | 87.7% |
| 4412026 | 2498.1.1.46 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Aspzincin_M35 | 0.65 | 57.0 | 4.93e-01 | 97.3% | 92.0% |
| None | — | 0.65 | 58.0 | 4.37e-01 | 100.0% | 46.4% | |
| 1147778 | 2498.1.1.16 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M9 | 0.65 | 57.0 | 4.31e-01 | 99.1% | 45.3% |
| 4015287 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 53.0 | 4.07e-01 | 88.2% | 41.6% |
| 4882845 | 2498.2.1.1 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glyco_hydro_20b | 0.58 | 45.0 | 4.26e-01 | 95.5% | 68.9% |
| 3003905 | 2498.1.1.2 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Astacin | 0.55 | 48.0 | 3.84e-01 | 95.5% | 80.5% |
| 4996711 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 46.0 | 4.47e-01 | 93.6% | 100.0% |
| 4215373 | 2498.1.1.35 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M54 | 0.52 | 45.0 | 4.05e-01 | 95.5% | 97.4% |
| 5042767 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 31.0 | 3.26e-01 | 99.1% | 63.3% |
| 4203886 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.50 | 35.0 | 2.72e-01 | 72.7% | 58.9% |
| 3281227 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.50 | 32.0 | 3.00e-01 | 90.9% | 50.4% |
D3
high
residues 266-378
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 34.0 | 4.31e-01 | 99.1% | 98.4% |
| 3bjoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 37.0 | 3.88e-01 | 85.8% | 68.9% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.57 | 29.0 | 3.13e-01 | 85.0% | 55.4% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.56 | 33.0 | 4.00e-01 | 74.3% | 89.2% |
| 5z4zC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 36.0 | 3.92e-01 | 84.1% | 83.0% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 41.0 | 3.75e-01 | 82.3% | 86.4% |
| 2qtqB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 45.0 | 3.80e-01 | 100.0% | 62.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 193347 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 40.0 | 4.05e-01 | 73.5% | 73.6% |
| 4399586 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.81e-01 | 99.1% | 64.6% |
| 3209632 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.55 | 34.0 | 3.51e-01 | 74.3% | 62.7% |
| 3292275 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.53 | 29.0 | 3.03e-01 | 70.8% | 52.7% |
| 3813600 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.51 | 34.0 | 3.26e-01 | 90.3% | 57.0% |
D4
medium
residues 412-479
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uy1A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 49.0 | 3.09e-01 | 100.0% | 27.2% |
| 3qdnA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 42.0 | 3.92e-01 | 80.9% | 85.7% |
| 4xkyA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 2.98e-01 | 100.0% | 55.4% |
| 3dz1A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 43.0 | 2.93e-01 | 100.0% | 57.1% |