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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1XX__00104

Bact-Vir

SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00104

Identity

Kingdom:: phage

Quality

65.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-60_81-158_607-705

PDB

D2 medium residues 159-232_291-327_382-392

PDB

D3 medium residues 233-290

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2d29A02	2.40.110.10	Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2	0.53	38.0	3.15e-01	77.6%	92.8%
1a97B00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.53	39.0	3.01e-01	82.8%	34.5%
4f0qD01	2.30.280.20	Mainly Beta › Roll › PUA domain-like ›	0.52	40.0	2.75e-01	91.4%	71.4%
1bd3A00	3.40.50.2020	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.52	40.0	2.73e-01	96.6%	22.3%
2hpiA01	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.51	39.0	2.64e-01	91.4%	99.3%
2wkcB00	2.40.50.400	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein	0.50	36.0	3.12e-01	74.1%	78.7%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3621341	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.62	42.0	3.91e-01	70.7%	66.7%
4304580	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.62	43.0	2.90e-01	74.1%	26.7%
3657857	2004.1.1.162 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51	0.59	43.0	2.82e-01	79.3%	68.9%
4491557	323.1.1.3 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding	0.57	47.0	3.44e-01	98.3%	41.6%
3930204	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	43.0	3.46e-01	82.8%	70.8%
3233794	2006.1.4.27 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › RNase_Zc3h12a_2	0.57	41.0	3.15e-01	94.8%	32.1%
4329875	2008.1.1.6 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102	0.56	39.0	3.13e-01	75.9%	61.6%
3884922	7579.1.1.14 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3	0.55	42.0	2.64e-01	87.9%	23.1%
3739960	2003.1.5.81 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25	0.54	41.0	3.19e-01	86.2%	93.1%
4946723	7592.1.1.13 ↗	a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csm6_6H	0.53	41.0	3.14e-01	87.9%	41.3%
3167619	7573.1.1.1 ↗	a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran	0.52	42.0	2.89e-01	91.4%	31.6%
4145438	3747.1.1.3 ↗	a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C	0.52	37.0	3.14e-01	77.6%	50.0%
4950064	327.16.1.22 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275	0.51	32.0	3.08e-01	87.9%	52.9%
3601350	2006.1.6.19 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › IML1	0.51	39.0	2.63e-01	86.2%	28.7%
3698250	7600.1.1.0 ↗	a/b three-layered sandwiches › Chromo domain-containing protein 1 (Chp1) domain II › Chromo domain-containing protein 1 (Chp1) domain II › Chromo domain-containing protein 1 (Chp1) domain II	0.51	42.0	3.32e-01	94.8%	48.0%

D4 medium residues 328-381

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1l1lA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.51	36.0	2.16e-01	77.8%	28.2%

D5 medium residues 393-456_495-521

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mw5A01	1.20.272.30	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.50	44.0	3.81e-01	100.0%	81.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3791858	1128.1.1.3 ↗	alpha bundles › LYR protein › LYR protein › LYR protein › UQCC2_CBP6	0.52	34.0	3.45e-01	100.0%	66.7%
3265510	267.1.1.3 ↗	a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase	0.51	36.0	2.92e-01	74.7%	43.8%

D6 medium residues 471-494_522-593

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3jc6C00	1.20.58.2050	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.52	35.0	3.05e-01	71.9%	88.1%