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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00126

Bact-Vir

SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00126

Identity

Kingdom:
phage

Quality

81.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56_291-302
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ekiA01 3.40.190.180 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I 0.58 51.0 3.77e-01 98.5% 75.0%
8f5dA01 3.40.1390.10 Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain 0.56 38.0 3.50e-01 70.6% 84.9%
3ca8A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 37.0 2.88e-01 79.4% 69.7%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4163006 2007.1.3.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.59 43.0 3.67e-01 79.4% 76.5%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 46.0 3.00e-01 98.5% 43.9%
4354223 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.54 41.0 3.12e-01 86.8% 84.9%
5078149 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.54 44.0 3.56e-01 92.6% 68.1%
5059128 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 42.0 3.44e-01 94.1% 86.2%
D2 medium residues 72-249_330-352_376-398
PDB