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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00126
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00126
Identity
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56_291-302
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ekiA01 | 3.40.190.180 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Cypl, domain I | 0.58 | 51.0 | 3.77e-01 | 98.5% | 75.0% |
| 8f5dA01 | 3.40.1390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1 › MurE/MurF, N-terminal domain | 0.56 | 38.0 | 3.50e-01 | 70.6% | 84.9% |
| 3ca8A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 37.0 | 2.88e-01 | 79.4% | 69.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4163006 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.59 | 43.0 | 3.67e-01 | 79.4% | 76.5% |
| 3989004 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 46.0 | 3.00e-01 | 98.5% | 43.9% |
| 4354223 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.54 | 41.0 | 3.12e-01 | 86.8% | 84.9% |
| 5078149 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.54 | 44.0 | 3.56e-01 | 92.6% | 68.1% |
| 5059128 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 42.0 | 3.44e-01 | 94.1% | 86.2% |
D2
medium
residues 72-249_330-352_376-398
Domain cluster:
rep: SR-VP_4-6_scaffold_141_2201553_prodigal-single.1__X__X__00031__D412-539_1022-1053