←Back to structures
SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00129
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00129
Identity
- Kingdom:
- phage
Quality
65.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-83
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.68 | 46.0 | 4.72e-01 | 72.9% | 76.6% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.63 | 45.0 | 3.87e-01 | 77.1% | 50.0% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.61 | 35.0 | 2.95e-01 | 100.0% | 32.1% |
| 1vw3C01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 45.0 | 3.34e-01 | 83.3% | 41.2% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.60 | 41.0 | 4.00e-01 | 72.9% | 100.0% |
| 3u50C02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.58 | 39.0 | 4.24e-01 | 75.0% | 100.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.58 | 43.0 | 3.99e-01 | 85.4% | 63.9% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.58 | 39.0 | 4.10e-01 | 77.1% | 97.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 43.0 | 3.94e-01 | 95.8% | 81.6% |
| 2id5D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 3.27e-01 | 81.2% | 51.1% |
| 2ahuA01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.54 | 41.0 | 2.58e-01 | 87.5% | 37.0% |
| 5eyaF00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 41.0 | 3.67e-01 | 91.7% | 73.7% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 43.0 | 4.02e-01 | 97.9% | 93.5% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.09e-01 | 87.5% | 59.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028456 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 54.0 | 5.62e-01 | 72.9% | 80.0% |
| 4995783 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 50.0 | 5.36e-01 | 70.8% | 90.0% |
| 3840576 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.74 | 50.0 | 4.42e-01 | 70.8% | 55.7% |
| 3907697 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.74 | 50.0 | 4.30e-01 | 70.8% | 46.7% |
| 3678606 | 375.1.1.212 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_2 | 0.74 | 50.0 | 5.42e-01 | 70.8% | 100.0% |
| 3903614 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.74 | 62.0 | 5.70e-01 | 97.9% | 83.1% |
| 5077070 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.73 | 64.0 | 5.95e-01 | 100.0% | 85.0% |
| 3566936 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.72 | 49.0 | 4.45e-01 | 70.8% | 53.8% |
| 4981108 | 375.1.1.331 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 | 0.72 | 53.0 | 5.47e-01 | 81.2% | 97.8% |
| 3226989 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.71 | 58.0 | 5.61e-01 | 93.8% | 90.9% |
| 3784620 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.71 | 48.0 | 4.61e-01 | 70.8% | 63.6% |
| 4979347 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.71 | 61.0 | 5.45e-01 | 100.0% | 80.0% |
| 3261059 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.70 | 48.0 | 4.21e-01 | 72.9% | 73.3% |
| 3671234 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.70 | 47.0 | 5.12e-01 | 70.8% | 100.0% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 49.0 | 5.00e-01 | 75.0% | 84.4% |
| 4959767 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.70 | 59.0 | 5.58e-01 | 100.0% | 95.0% |
| 4969798 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.69 | 58.0 | 5.64e-01 | 100.0% | 98.2% |
| 3581878 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.68 | 46.0 | 4.24e-01 | 70.8% | 60.0% |
| 3419900 | 375.1.1.200 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 | 0.68 | 46.0 | 4.91e-01 | 70.8% | 100.0% |
| 4947213 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.68 | 58.0 | 5.59e-01 | 100.0% | 98.2% |
| 4970821 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.68 | 58.0 | 5.20e-01 | 100.0% | 84.3% |
| 4991529 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.67 | 55.0 | 5.22e-01 | 97.9% | 88.3% |
| 4950325 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.67 | 56.0 | 4.78e-01 | 100.0% | 68.2% |
| 3388528 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.67 | 48.0 | 5.04e-01 | 79.2% | 97.5% |
| 3440046 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 46.0 | 4.83e-01 | 75.0% | 92.5% |
| 5030549 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.66 | 54.0 | 5.24e-01 | 100.0% | 98.2% |
| 5072403 | 375.5.1.0 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like | 0.65 | 47.0 | 4.84e-01 | 91.7% | 86.7% |
| 3724438 | 376.1.4.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 | 0.62 | 42.0 | 3.91e-01 | 70.8% | 53.8% |
| 4991560 | 2002.1.1.75 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › QRPTase_C | 0.62 | 42.0 | 2.68e-01 | 75.0% | 13.3% |
| 3211769 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.62 | 45.0 | 4.32e-01 | 83.3% | 88.3% |
| 3494189 | 1181.1.1.0 ↗ | 0.60 | 43.0 | 4.01e-01 | 93.8% | 60.0% | |
| 5015962 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.59 | 46.0 | 4.62e-01 | 93.8% | 96.0% |
| 3607436 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.59 | 41.0 | 3.52e-01 | 79.2% | 58.9% |
| 4960524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.46e-01 | 89.6% | 95.6% |
| 4424001 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.56 | 45.0 | 3.57e-01 | 100.0% | 83.3% |
| 3934797 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.56 | 38.0 | 2.93e-01 | 75.0% | 33.3% |
| 3907395 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.54 | 41.0 | 3.32e-01 | 85.4% | 55.0% |
| 3711061 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 39.0 | 3.43e-01 | 79.2% | 97.3% |
| 3932190 | 394.1.1.0 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins | 0.54 | 31.0 | 3.55e-01 | 70.8% | 80.0% |
| 4942565 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 40.0 | 3.37e-01 | 85.4% | 63.3% |
| 3894725 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.53 | 40.0 | 3.01e-01 | 85.4% | 37.0% |
| 3905380 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.52 | 37.0 | 3.00e-01 | 79.2% | 44.8% |