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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00158

Bact-Vir

SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00158

Identity

Kingdom:
phage

Quality

64.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-72
PDB
Domain cluster: rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00554__D12-65
D2 high residues 304-369
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wu8B01 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.72 58.0 5.55e-01 90.9% 98.7%
2nxpB00 1.25.40.500 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain 0.67 49.0 3.85e-01 78.8% 51.0%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.67 49.0 3.98e-01 92.4% 40.5%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.66 47.0 3.80e-01 77.3% 41.7%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 4.72e-01 100.0% 89.8%
7dvqK01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.60 43.0 3.27e-01 78.8% 39.9%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 43.0 3.24e-01 80.3% 52.2%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 44.0 3.25e-01 84.8% 52.7%
1e91A00 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.58 45.0 4.19e-01 86.4% 96.5%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 43.0 3.74e-01 81.8% 79.1%
2yvyA01 1.25.60.10 Mainly Alpha › Alpha Horseshoe › MgtE N-terminal fold › MgtE N-terminal domain-like 0.58 48.0 3.95e-01 93.9% 60.0%
1x9bA00 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.58 42.0 4.55e-01 98.5% 98.1%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.57 42.0 4.02e-01 81.8% 79.0%
3kkcA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 43.0 3.29e-01 84.8% 58.2%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.56 42.0 3.54e-01 83.3% 95.9%
1uouA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.56 39.0 3.89e-01 72.7% 92.6%
2wapA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.55 45.0 2.74e-01 98.5% 26.8%
2ovrB01 1.20.1280.50 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 44.0 4.04e-01 100.0% 70.1%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 40.0 3.41e-01 81.8% 98.2%
3lmoA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.52 41.0 3.75e-01 93.9% 62.8%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 43.0 3.97e-01 97.0% 98.9%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265230 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 4.31e-01 77.3% 62.9%
3646875 109.4.1.1136 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_PRP39_N 0.67 49.0 4.13e-01 78.8% 59.1%
3720189 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 51.0 3.20e-01 87.9% 16.8%
4342098 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 46.0 4.15e-01 80.3% 70.5%
3984129 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.62 42.0 4.24e-01 71.2% 92.3%
3496385 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 49.0 3.69e-01 92.4% 42.7%
3510249 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.59 40.0 3.67e-01 72.7% 67.7%
3838954 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.58 46.0 4.02e-01 92.4% 81.8%
3610945 109.54.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.55 41.0 3.65e-01 84.8% 86.7%
3474719 170.1.1.23 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30931 0.55 38.0 3.69e-01 75.8% 77.5%
4957898 191.1.1.63 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.53 39.0 2.97e-01 84.8% 56.0%
4105867 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.53 44.0 3.10e-01 100.0% 40.4%
3285760 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 41.0 3.17e-01 100.0% 89.4%