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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00162

Bact-Vir

SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00162

Identity

Kingdom:
phage

Quality

89.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-114
PDB
Domain cluster: rep: ENA-CEUD01013717-CEUD01013717-1_prodigal-single.1__X__X__00133__D3-101
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 46.0 3.30e-01 79.8% 34.8%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 43.0 3.26e-01 76.1% 33.2%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 43.0 3.03e-01 79.8% 37.7%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 40.0 3.18e-01 74.3% 38.1%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 42.0 3.01e-01 78.0% 91.9%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.56 39.0 2.90e-01 72.5% 85.5%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 49.0 3.58e-01 99.1% 75.2%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 3.06e-01 86.2% 58.1%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.83e-01 87.2% 35.6%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 37.0 3.36e-01 70.6% 75.3%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.76e-01 87.2% 79.5%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.52 41.0 3.89e-01 83.5% 88.3%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 36.0 3.58e-01 73.4% 84.1%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.51 35.0 3.56e-01 73.4% 85.0%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.33e-01 70.6% 94.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4992060 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.61 42.0 3.60e-01 70.6% 81.7%
3833804 5.1.2.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › GINT1_N 0.61 43.0 3.06e-01 73.4% 35.6%
3827726 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 41.0 3.01e-01 77.1% 25.9%
3626173 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 44.0 3.10e-01 78.9% 32.6%
4947640 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.58 45.0 3.47e-01 83.5% 52.2%
5010078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 42.0 2.85e-01 75.2% 24.7%
5012345 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.57 45.0 3.46e-01 84.4% 64.7%
4057630 220.1.1.188 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BUD3_C 0.57 41.0 3.56e-01 73.4% 80.0%
3784090 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 3.03e-01 85.3% 24.4%
3592697 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.91e-01 78.9% 43.6%
3257390 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 43.0 3.15e-01 82.6% 31.0%
3622477 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.55 45.0 3.51e-01 89.0% 66.1%
3313814 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.55 45.0 3.80e-01 86.2% 66.9%
2967043 216.1.1.32 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF29693 0.55 38.0 3.53e-01 74.3% 57.0%
3433806 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.53 37.0 2.93e-01 71.6% 40.4%
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.53 37.0 4.20e-01 72.5% 100.0%
3691625 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 41.0 2.76e-01 83.5% 31.3%
3408648 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 34.0 3.59e-01 78.9% 73.0%
3187942 5.1.4.655 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9 0.50 43.0 2.66e-01 100.0% 43.8%
D2 high residues 123-210
PDB
Domain cluster: rep: IMGVR_UViG_3300029928_000026-3300029928-Ga0116643_100034311__D18-99