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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00168
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00168
Identity
- Kingdom:
- phage
Quality
64.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 195-288
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2v0xA01 | 1.10.287.3160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 65.0 | 5.18e-01 | 76.6% | 44.0% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.84 | 59.0 | 5.67e-01 | 72.3% | 65.1% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.79 | 69.0 | 6.81e-01 | 94.7% | 88.9% |
| 3zc0D00 | 1.20.58.2140 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 67.0 | 5.26e-01 | 92.6% | 65.2% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 56.0 | 5.42e-01 | 75.5% | 72.4% |
| 3nyjA00 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.76 | 68.0 | 5.39e-01 | 96.8% | 65.7% |
| 3agtA00 | 1.20.120.50 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like | 0.76 | 53.0 | 4.67e-01 | 72.3% | 70.7% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 60.0 | 5.80e-01 | 83.0% | 100.0% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.75 | 53.0 | 4.88e-01 | 72.3% | 83.1% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.75 | 61.0 | 5.91e-01 | 85.1% | 100.0% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.75 | 54.0 | 4.58e-01 | 75.5% | 69.5% |
| 1fewA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 69.0 | 5.53e-01 | 100.0% | 86.7% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.74 | 63.0 | 6.04e-01 | 90.4% | 83.0% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 54.0 | 5.40e-01 | 76.6% | 83.0% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.73 | 54.0 | 4.99e-01 | 77.7% | 73.1% |
| 2yfaA02 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.73 | 57.0 | 5.34e-01 | 84.0% | 75.0% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.72 | 49.0 | 5.39e-01 | 70.2% | 89.6% |
| 1yw0A00 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 61.0 | 4.42e-01 | 90.4% | 58.8% |
| 2hz8A00 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.72 | 52.0 | 4.85e-01 | 75.5% | 83.5% |
| 2o36A01 | 1.20.1050.40 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 | 0.72 | 54.0 | 4.89e-01 | 79.8% | 75.8% |
| 3h3mA00 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.70 | 51.0 | 5.22e-01 | 74.5% | 91.0% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.70 | 49.0 | 5.10e-01 | 76.6% | 79.1% |
| 1sj8A02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.69 | 50.0 | 4.62e-01 | 75.5% | 71.3% |
| 3ggyA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.69 | 61.0 | 4.86e-01 | 96.8% | 97.3% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.68 | 48.0 | 4.13e-01 | 73.4% | 93.9% |
| 3a7mA01 | 1.20.58.380 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. | 0.68 | 51.0 | 4.80e-01 | 77.7% | 76.4% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.67 | 53.0 | 4.82e-01 | 84.0% | 73.6% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.67 | 54.0 | 4.51e-01 | 85.1% | 60.4% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.66 | 45.0 | 3.71e-01 | 73.4% | 39.4% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.66 | 46.0 | 4.90e-01 | 72.3% | 92.8% |
| 1x46A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 46.0 | 3.97e-01 | 73.4% | 88.7% |
| 4agsB04 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 50.0 | 4.46e-01 | 81.9% | 98.5% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 4.81e-01 | 84.0% | 100.0% |
| 1hs7A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 49.0 | 4.88e-01 | 84.0% | 96.9% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 41.0 | 4.81e-01 | 70.2% | 98.4% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 44.0 | 4.62e-01 | 74.5% | 94.3% |
| 2y1vA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 47.0 | 3.78e-01 | 81.9% | 78.4% |
| 1sg2A00 | 3.30.910.20 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain | 0.61 | 42.0 | 3.74e-01 | 71.3% | 48.2% |
| 7ru9C01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 49.0 | 3.53e-01 | 87.2% | 49.4% |
| 2o5vA02 | 1.20.1050.90 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › RecF/RecN/SMC, N-terminal domain | 0.61 | 45.0 | 3.65e-01 | 76.6% | 59.7% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.57 | 32.0 | 3.58e-01 | 72.3% | 68.9% |
| 1hi8A02 | 1.10.490.60 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phage p2 RNA dependent RNA polymerase domain | 0.51 | 37.0 | 3.30e-01 | 77.7% | 64.6% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4534445 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.93 | 69.0 | 7.12e-01 | 76.6% | 80.0% |
| 4966374 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.89 | 66.0 | 5.17e-01 | 75.5% | 42.3% |
| 5031890 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.89 | 66.0 | 4.69e-01 | 76.6% | 29.4% |
| 3783600 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.85 | 63.0 | 5.94e-01 | 76.6% | 65.5% |
| 4629385 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.83 | 60.0 | 5.07e-01 | 75.5% | 52.0% |
| 4025945 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 62.0 | 5.51e-01 | 78.7% | 63.1% |
| 4959593 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.82 | 60.0 | 5.20e-01 | 76.6% | 82.9% |
| 5050536 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.81 | 55.0 | 6.29e-01 | 75.5% | 92.9% |
| 4360895 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.81 | 44.0 | 4.26e-01 | 100.0% | 48.6% |
| 4019540 | 109.4.1.862 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 | 0.81 | 75.0 | 4.45e-01 | 100.0% | 15.4% |
| 4969098 | 3926.1.1.0 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D | 0.80 | 58.0 | 4.68e-01 | 75.5% | 72.6% |
| 3320610 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.80 | 71.0 | 6.15e-01 | 95.7% | 90.7% |
| 3639718 | 109.4.1.862 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZW10_C2 | 0.80 | 67.0 | 4.03e-01 | 89.4% | 14.2% |
| 5056292 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.80 | 64.0 | 5.75e-01 | 89.4% | 63.2% |
| 3939780 | 109.4.1.1373 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C, Vps54_N | 0.79 | 66.0 | 3.93e-01 | 91.5% | 12.9% |
| 3780286 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.77 | 56.0 | 3.44e-01 | 76.6% | 15.2% |
| 3506950 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.77 | 60.0 | 6.14e-01 | 80.9% | 100.0% |
| 4128915 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 48.0 | 4.25e-01 | 70.2% | 44.4% |
| 3608673 | 109.4.1.194 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 | 0.77 | 57.0 | 3.77e-01 | 76.6% | 64.6% |
| 4945785 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.77 | 71.0 | 5.69e-01 | 100.0% | 96.6% |
| 3356163 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 61.0 | 4.49e-01 | 85.1% | 45.2% |
| 3260606 | 3291.1.1.3 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Ist1 | 0.75 | 63.0 | 5.06e-01 | 89.4% | 95.4% |
| 3608758 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.75 | 54.0 | 5.83e-01 | 74.5% | 92.5% |
| 4996465 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.75 | 55.0 | 4.15e-01 | 75.5% | 52.7% |
| 3456188 | 109.7.1.10 ↗ | alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › WAV3_C | 0.74 | 49.0 | 5.46e-01 | 74.5% | 85.3% |
| 3497423 | 109.4.1.1373 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Syndetin_C, Vps54_N | 0.73 | 65.0 | 3.91e-01 | 100.0% | 29.4% |
| 5048081 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.73 | 52.0 | 5.75e-01 | 74.5% | 92.0% |
| 3208696 | 109.4.1.2122 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle, ZW10_C2 | 0.73 | 65.0 | 3.96e-01 | 100.0% | 25.9% |
| 3710139 | 604.13.1.0 ↗ | alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like | 0.73 | 50.0 | 4.47e-01 | 70.2% | 52.8% |
| 3354926 | 9001.1.1.1 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TRAM_LAG1_CLN8 | 0.73 | 51.0 | 4.66e-01 | 72.3% | 87.5% |
| 3773235 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.73 | 51.0 | 5.22e-01 | 72.3% | 80.0% |
| 3508235 | 109.4.1.1138 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SCAI | 0.72 | 52.0 | 5.12e-01 | 74.5% | 70.0% |
| 5005597 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.72 | 54.0 | 4.79e-01 | 79.8% | 87.4% |
| 1141909 | 3718.1.1.1 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT | 0.70 | 51.0 | 5.22e-01 | 74.5% | 91.0% |
| 3232756 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.70 | 48.0 | 5.09e-01 | 71.3% | 87.1% |
| 3788338 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.69 | 49.0 | 5.42e-01 | 73.4% | 95.9% |
| 3267859 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.69 | 52.0 | 5.30e-01 | 78.7% | 96.7% |
| 3603360 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.69 | 54.0 | 5.07e-01 | 84.0% | 90.4% |
| 3527051 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.67 | 55.0 | 5.53e-01 | 87.2% | 88.4% |
| 5023287 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 45.0 | 5.00e-01 | 74.5% | 92.9% |
| 3228061 | 1147.1.1.1 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL | 0.66 | 47.0 | 4.29e-01 | 74.5% | 54.7% |
| 3652633 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.66 | 51.0 | 4.64e-01 | 84.0% | 77.7% |
| 3424395 | 109.4.1.95 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 | 0.65 | 42.0 | 3.99e-01 | 85.1% | 54.5% |
| 3928035 | 109.4.1.1504 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26103 | 0.65 | 48.0 | 3.14e-01 | 78.7% | 28.9% |
| 3815641 | 109.4.1.2914 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, TPR_16, PF31234 | 0.61 | 47.0 | 2.69e-01 | 84.0% | 8.7% |
D2
medium
residues 34-161
Domain cluster:
representative
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4410525 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 39.0 | 3.31e-01 | 71.1% | 94.5% |
| 3364608 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 3.04e-01 | 77.3% | 69.5% |
| 3179413 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 44.0 | 3.26e-01 | 92.2% | 82.7% |
| 3743434 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.51 | 38.0 | 2.98e-01 | 78.1% | 77.9% |
| 3441767 | 4133.1.1.2 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 | 0.50 | 38.0 | 3.11e-01 | 80.5% | 98.8% |