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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00192
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00192
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-29_98-152
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u61A00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.65 | 52.0 | 4.51e-01 | 87.7% | 74.8% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 44.0 | 4.78e-01 | 70.4% | 93.9% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.63 | 56.0 | 5.27e-01 | 100.0% | 82.5% |
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.62 | 52.0 | 4.43e-01 | 100.0% | 57.4% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.62 | 47.0 | 4.09e-01 | 80.2% | 97.5% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 38.0 | 4.39e-01 | 77.8% | 87.7% |
| 1vw4501 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.61 | 49.0 | 3.54e-01 | 87.7% | 48.7% |
| 6jrpA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.57 | 36.0 | 3.93e-01 | 76.5% | 82.0% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.57 | 43.0 | 3.25e-01 | 82.7% | 58.8% |
| 4p78A00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 39.0 | 3.87e-01 | 95.1% | 67.4% |
| 2w43A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 38.0 | 4.33e-01 | 85.2% | 98.2% |
| 3ndaA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.56 | 48.0 | 3.55e-01 | 100.0% | 96.3% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.56 | 40.0 | 3.72e-01 | 85.2% | 57.5% |
| 3r0xA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 44.0 | 3.82e-01 | 92.6% | 55.3% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 43.0 | 3.64e-01 | 82.7% | 60.9% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 38.0 | 4.38e-01 | 85.2% | 100.0% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.54 | 43.0 | 4.34e-01 | 87.7% | 84.1% |
| 3juwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 37.0 | 2.95e-01 | 98.8% | 35.3% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 3.74e-01 | 87.7% | 70.5% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 33.0 | 3.44e-01 | 74.1% | 68.9% |
| 3geeA02 | 1.20.120.430 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 | 0.52 | 44.0 | 3.50e-01 | 92.6% | 71.4% |
| 4q5qA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 46.0 | 4.20e-01 | 100.0% | 74.3% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.52 | 40.0 | 3.89e-01 | 81.5% | 88.9% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.52 | 46.0 | 4.26e-01 | 100.0% | 89.2% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 42.0 | 3.84e-01 | 90.1% | 72.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3896892 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.67 | 54.0 | 4.51e-01 | 100.0% | 49.7% |
| 3999659 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 44.0 | 4.56e-01 | 72.8% | 74.7% |
| 3706917 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 58.0 | 5.13e-01 | 100.0% | 87.8% |
| 4157142 | 150.5.1.7 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 | 0.63 | 46.0 | 4.15e-01 | 79.0% | 61.7% |
| 4944918 | 150.1.1.208 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › RUBY_RBDX | 0.62 | 49.0 | 4.03e-01 | 86.4% | 83.3% |
| 3492508 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.60 | 53.0 | 3.21e-01 | 100.0% | 62.3% |
| 5047770 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.59 | 40.0 | 3.84e-01 | 96.3% | 61.3% |
| 4140367 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.58 | 47.0 | 3.95e-01 | 91.4% | 92.6% |
| 3817153 | 4207.1.1.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) | 0.58 | 44.0 | 4.00e-01 | 80.2% | 61.0% |
| 3736030 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.58 | 52.0 | 3.79e-01 | 100.0% | 44.1% |
| 3200555 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.58 | 43.0 | 4.19e-01 | 79.0% | 93.3% |
| 3197663 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.57 | 48.0 | 3.68e-01 | 97.5% | 72.7% |
| 4975796 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.56 | 42.0 | 4.05e-01 | 95.1% | 69.5% |
| 3644932 | 5069.1.3.62 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Mito_carr | 0.55 | 48.0 | 4.14e-01 | 95.1% | 98.4% |
| 3432843 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.54 | 39.0 | 3.24e-01 | 77.8% | 45.9% |
| 3596372 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 34.0 | 3.27e-01 | 93.8% | 54.7% |
| 3935032 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.52 | 43.0 | 3.93e-01 | 87.7% | 81.0% |
| 3614319 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 35.0 | 3.73e-01 | 85.2% | 80.0% |
| 2325490 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 42.0 | 3.79e-01 | 90.1% | 69.6% |
| 3940777 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 45.0 | 4.13e-01 | 100.0% | 91.4% |
| 5035232 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.50 | 39.0 | 4.15e-01 | 82.7% | 97.1% |
| 4234479 | 3694.1.1.2 ↗ | alpha bundles › Tail specific protease helical domain › Tail specific protease helical domain › Tail specific protease helical domain › Tricorn_C1 | 0.50 | 35.0 | 3.49e-01 | 74.1% | 90.6% |
D2
medium
residues 31-93
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yh9B00 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.51 | 31.0 | 3.07e-01 | 82.5% | 54.4% |