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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00288
Bact-VirSR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00288
Identity
- Kingdom:
- phage
Quality
52.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-179
Domain cluster:
rep: ON755184.1__UVF61518.1__SEA_DALANDE_105__00105__D152-256
D2
high
residues 719-848
Domain cluster:
rep: SRR1747055_scaffold_2_prodigal-single.1__X__X__00342__D202-325
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.70 | 48.0 | 5.58e-01 | 95.4% | 97.8% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.69 | 46.0 | 5.33e-01 | 95.4% | 93.7% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.65 | 57.0 | 5.91e-01 | 95.4% | 98.4% |
| 6hhuA01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 26.0 | 3.20e-01 | 85.4% | 73.1% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 26.0 | 3.12e-01 | 87.7% | 69.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002645 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 37.0 | 5.52e-01 | 95.4% | 100.0% |
| 4937267 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 61.0 | 6.37e-01 | 93.1% | 98.3% |
| 5033307 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 64.0 | 6.23e-01 | 96.2% | 96.4% |
| 4655870 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.55 | 34.0 | 3.47e-01 | 86.9% | 61.5% |
| 5008430 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 29.0 | 3.47e-01 | 87.7% | 78.8% |
| 3712506 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 26.0 | 3.06e-01 | 87.7% | 69.4% |
D3
medium
residues 543-635