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SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00292

Bact-Vir

SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00292

Identity

Kingdom:
phage

Quality

82.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-125
PDB
Domain cluster: rep: H2c1_full_idba_ud_scaffold_88_prodigal-single.1__X__X__00433__D105-198
D2 high residues 134-211
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00393__D149-228
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yprA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 38.0 3.30e-01 85.9% 37.6%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.62 45.0 3.49e-01 76.9% 83.1%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.61 41.0 3.02e-01 93.6% 24.8%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 39.0 3.44e-01 73.1% 95.9%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.56 49.0 4.01e-01 98.7% 56.0%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.56 40.0 3.13e-01 100.0% 36.9%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 2.97e-01 89.7% 23.6%
5a35A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 43.0 3.88e-01 87.2% 64.3%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.53 41.0 3.42e-01 87.2% 66.0%
5f7uA02 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.53 40.0 3.01e-01 84.6% 96.9%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.78e-01 100.0% 70.5%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.30e-01 100.0% 34.1%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.48e-01 100.0% 41.5%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 41.0 4.02e-01 89.7% 76.4%
4ig1A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.52 46.0 3.05e-01 100.0% 60.1%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.52 43.0 3.70e-01 93.6% 94.5%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.64e-01 92.3% 57.0%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 3.73e-01 79.5% 84.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.65e-01 92.3% 71.3%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 42.0 3.81e-01 97.4% 87.1%
1c5kA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 40.0 2.86e-01 91.0% 30.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3233005 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.79 42.0 2.87e-01 100.0% 16.1%
3242741 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.77 43.0 2.89e-01 100.0% 16.3%
5053431 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.75 44.0 3.44e-01 100.0% 29.0%
5000881 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 40.0 3.22e-01 87.2% 30.3%
4941285 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.61 33.0 3.48e-01 98.7% 58.6%
3590243 6044.1.1.1 ↗ a+b three layers › DUF1827-like › DUF1827-like › DUF1827-like › DUF1827 0.59 41.0 3.69e-01 100.0% 53.3%
4259063 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.58 43.0 2.90e-01 80.8% 51.2%
3218903 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 40.0 2.98e-01 73.1% 27.6%
3222216 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 37.0 3.89e-01 100.0% 72.9%
3739528 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.57 48.0 3.52e-01 91.0% 39.0%
3957060 325.1.6.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 0.57 44.0 3.63e-01 93.6% 45.5%
5039195 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.57 46.0 3.38e-01 89.7% 37.7%
4942135 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.56 37.0 3.20e-01 100.0% 42.7%
3615896 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 40.0 2.91e-01 96.2% 29.0%
3789660 897.1.1.0 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 0.56 40.0 2.93e-01 96.2% 29.7%
3953943 9.27.1.1 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH › Myco_19_kDa 0.54 41.0 3.69e-01 100.0% 58.2%
5039380 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.90e-01 91.0% 24.6%
4944998 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.50e-01 82.1% 97.6%
3933902 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.78e-01 98.7% 19.4%
4952908 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.52 41.0 2.71e-01 98.7% 18.7%
5075279 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 3.38e-01 78.2% 91.3%
4973789 298.2.1.1 ↗ a+b two layers › FwdE/GAPDH domain-like › FwdE-like › FwdE-like › FmdE 0.51 36.0 2.86e-01 96.2% 34.5%
5010204 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.51 43.0 2.77e-01 100.0% 19.0%
5019065 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.51 39.0 2.48e-01 100.0% 14.6%
3402706 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.51 41.0 3.19e-01 100.0% 41.2%
3582195 12.3.1.18 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydr_116N 0.51 43.0 3.11e-01 100.0% 65.1%